Candidatus Peribacter riflensis: PeribacterA2_0145
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Entry
PeribacterA2_0145 CDS
T04147
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
prf
Candidatus Peribacter riflensis
Pathway
prf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PeribacterA2_0145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prf03400
]
PeribacterA2_0145
DNA repair and recombination proteins [BR:
prf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PeribacterA2_0145
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PeribacterA2_0145
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
nSTAND1
AAA_21
AAA_16
AAA_29
RsgA_GTPase
BCA_ABC_TP_C
DnaJ_CXXCXGXG
AAA_23
DUF6011
ThiI
Motif
Other DBs
NCBI-ProteinID:
ALM09540
LinkDB
All DBs
Position
complement(147105..150032)
Genome browser
AA seq
975 aa
AA seq
DB search
MDAIIVKGARMHNLKNVDVTIPRNKLTVITGLSGSGKSSLAFDTIFAEGQRRYVESLSAY
ARQFIAQMEKPEVESIEGLSPAISIDQKTSPRNPRSTVGTVTEIYDYMRLLWAKAGSVHC
TVCGRQLTQQSSTQIIETIAQMPEGTKIFLLSPLVEGRKGSHVKILDLIRREGFVRMRVD
GQIVTTDEETELDPKKSHTIEIVVDRLIVRDLEVKEGQSNPNRTRLADSVELALKKGENS
IIVLESDTNKETRFSEQFVCPDHPNEAVAQLEPRNFSFNSPHGACEVCHGLGAILQVDEA
VLIPNPRLSLSEGAVHPWATSVSRMGFTTRLLEALAERLGFSMDTPWEKLAPEEREAILH
GSAEKLMVAFESEKFDGNYETSFEGVIPNLERRHRETDSSYVRQQIEEYMLELPCPSCQG
RRLKKEILGVTVGDRNIVDVTDLSVAQAKAFFVALVPEAKRKTIPGIATVTHLPAITPLS
DYAYAVVNKILREIIARLSFLENVGLTYLTLSRSAATLSGGEAQRIRLATQIGSALQGVL
YVLDEPSIGLHQRDNARLIATLTRLRELGNTVIVVEHDEETMRAADFLLEIGPGAGKYGG
EIVAQGTPEEIVKNPASVTGQYLSGKKAIPVPDKRRKGNGKSLTIRDAHHHNLQHIDVTL
PLGTFIGVTGISGSGKSSLIHGILGPELQRVLNGAKSRAQDCGAIEGLEHLDKAIVIDQS
PIGRTPRSNPATYTGLFTEIRDVYSSLPESKLRGYKTGRFSFNVKGGRCEDCEGDGMKRI
EMHFLPDVFVTCETCKGQRYNRETLEITYKGKNIADALDMTVREALEFFSAIPGIKKKLQ
TLEDVGLGYLHLGQSATTLSGGEAQRVKLATELTKRATGKTFYILDEPTTGLHFDDIARL
LDVLQRLVDKGNSVLVIEHNLDVIKSVDYVLDLGPEGGDAGGKIVAQGTPEEVAKAKGSF
TGEYLGGMLAKPKKK
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggatgcaatcatcgtcaaaggcgcgaggatgcacaacctcaagaacgtggatgtgacg
attccgaggaacaagctgacggtcatcacggggttatccggctcgggcaagtcgtcgctc
gccttcgacacgatcttcgccgaagggcagcgccgctacgtcgagagcctttccgcctac
gcgcgccagttcatcgcgcagatggaaaagccggaggtggagtcgatcgagggcctgtcg
ccggccatctcgattgatcagaagacctcgccccgaaacccccgctccaccgtgggaacg
gtgaccgagatctacgactacatgcgtctgctctgggcaaaagcgggcagcgtgcactgc
accgtctgcggtcgccagctcacccagcagtcttcaacgcagatcatcgagaccatcgcg
cagatgccggaggggacgaaaattttcctcttatcccccctcgtcgagggacgcaaagga
tcgcacgtgaagatcctcgacctgatccgccgcgagggatttgtgcgcatgcgggtggat
ggtcagatcgtcacgacggatgaagagacagaactcgatccgaagaagtcgcacaccatc
gaaatcgtcgtggaccgcctcatcgtccgcgatctcgaagtaaaggagggacagagcaat
cccaatcgcacgcgccttgcggattccgtggagcttgcgctcaagaagggcgaaaactcg
atcatcgtgctcgagagcgacacgaacaaagaaacgcgcttctcggaacagttcgtctgc
cctgatcatcccaacgaggccgtcgcgcagctcgaaccgcggaacttctcgttcaattcc
ccgcacggcgcctgcgaagtctgccacggactcggggcgattctgcaggtggatgaagcg
gtgctcatccccaacccccgtctctcgctgtcggagggtgccgtgcatccgtgggccaca
tccgtttcgcgcatgggtttcaccacgcgcctcttggaagcgcttgcagagcgcctggga
ttcagcatggatacgccttgggagaagctcgcacccgaagaacgggaggccatcctccat
ggatcggccgaaaagctcatggtcgccttcgagagcgagaaatttgacgggaactacgaa
acgagtttcgagggggtgatccccaatctcgagcggcgccaccgcgagaccgactcgagc
tacgtgcgccagcagatcgaggagtacatgctcgagctcccctgcccctcgtgtcagggc
agacgcctgaagaaagagatcctcggcgtgaccgtgggcgaccgaaacatcgtagacgtg
acggacctgagcgtggcgcaggccaaggctttcttcgtcgcgctcgtgccggaagccaag
cgcaaaacgatacccggcatcgcaaccgttacgcatctgcccgccatcacgccgctctcg
gactacgcgtatgccgtggtaaacaagatcctgcgcgagatcatcgcgcgcttgagcttt
ctcgagaacgtggggctcacgtacttaaccctctcgcgctcggccgcaacgctctcgggc
ggcgaggcacagcgcatccgcctggccacgcagatcggctccgcgctgcagggcgtgctc
tacgtcctggatgaacccagtatcggtctgcaccagcgcgacaacgcccgtctcattgcg
accctcacacggctgcgtgaactgggtaacaccgtcattgtggtggagcacgacgaagag
acgatgcgtgcggcggattttctgctcgagatcggacccggtgcgggaaagtacggcggc
gagatcgtggcgcagggcacgccagaggagatcgtgaagaatcctgcatccgtgaccggc
cagtacttgagcggcaagaaggcgattcccgtgccggacaagcgccgcaagggcaacgga
aaatcgctcaccatccgcgacgcacaccatcacaacctgcagcacatcgatgtcaccctc
ccgctcggaaccttcatcggcgtgacgggcatttcgggctcgggaaaatcgagcctcatc
cacggcatcctcgggccggagctgcagcgggtgctgaatggcgccaagtcgcgcgcccag
gactgcggtgcgatcgaggggctggaacacctcgacaaggccatcgtcatcgaccagtcg
cccatcgggcgaacaccgcgctctaaccccgccacctacaccggactcttcaccgaaatc
cgtgatgtgtactcctcgcttcccgaatccaagctgcgcgggtacaagaccggccgcttc
agttttaacgtcaaaggcggacgctgcgaggactgcgaaggggacggcatgaagcgcatc
gagatgcactttctgcccgatgtgttcgtgacgtgcgagacgtgcaaaggccagcgctac
aaccgcgagacgctggagatcacctataaaggaaagaatatcgccgatgcgctcgacatg
acggtgcgcgaggcgctggagttcttctcggcgatcccgggcatcaagaagaagctgcag
accctcgaagacgtggggctgggctacctgcacctggggcagagcgccaccaccctctcg
ggcggagaggcgcagcgcgtgaagctggcgaccgagctcaccaagcgcgcgacgggcaag
accttctacattctggatgaacccacgacgggcctgcacttcgacgacatcgcacggctc
ttagacgtgctccaacggctcgtggacaaggggaactccgtcctcgtgatcgagcataac
ctggatgtgatcaaatcggtggattacgtgctggacctgggaccggagggcggcgatgcc
ggcggaaaaatcgtcgcgcaggggacgccggaggaggtggcgaaggcaaagggcagcttc
accggcgagtacctgggcgggatgctggcgaagccgaagaagaagtga
DBGET
integrated database retrieval system
