Candidatus Peribacter riflensis: PeribacterA2_0256
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Entry
PeribacterA2_0256 CDS
T04147
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
prf
Candidatus Peribacter riflensis
Pathway
prf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
prf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PeribacterA2_0256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prf03021
]
PeribacterA2_0256
03400 DNA repair and recombination proteins [BR:
prf03400
]
PeribacterA2_0256
Enzymes [BR:
prf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PeribacterA2_0256
Transcription machinery [BR:
prf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PeribacterA2_0256
DNA repair and recombination proteins [BR:
prf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PeribacterA2_0256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
YlqD
Apocytochr_F_C
DUF4407
Motif
Other DBs
NCBI-ProteinID:
ALM09648
UniProt:
A0A0S1SLU1
LinkDB
All DBs
Position
262874..266818
Genome browser
AA seq
1314 aa
AA seq
DB search
MPAPKISAATDSFDAVALSVASPEDVLAWSRGEVTKPETVNYRTQRAEPDGLFCERIFGP
TKNFQCFCGKYKGVRYSGVVCEKCGVEVTRSIVRRERMGHINLAVPVTHIWFLRSSPSRI
GLLLDLPIKTLEQIVYFAAYIVISVDEDQKKEAEKELDASMDQRKKQVKSEYDQAKKELN
ESKATRAQMDALDKEYADKLETLKANHREALDDLKNLHVGAVLSELKFREVNMKFGHVFR
AGTGAESLKEIVANIRLDEMYEELAKERTQASGQRLKKLMKRMKLVMSLKKAMIKPEWMI
LTRLQVIPPDLRPMVQLDGGRFAASDLNDLYRRVINRNNRLKKLMSIGAPEVICRNEKRM
LQEAVDTLLNNSARAGKTLFTAGDRRKLRSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIV
VGPELKLYQCGLPKEMAMKLFKPFVIGRLIRDELAHNVKGAERLVQDGGREVWDILEEVI
AGKYVLLNRAPTLHRLGIQAFRPKLVEGLAIRLHPLVCAAFNADFDGDQMAVHVPLSEKA
QYEAATLMAAHQNLLKPSAGEPIINPAQDMVLGCYFLTQVHSGKKGEGMVFSSPEEAFLA
YAQDVVDLQAKIKVRTSLPGEEPKIVETSVGRLRFQEIVPPALGLINKTMRKKDLSAMLA
HALDVVGREETVELADRIKDIGFEFATISGISIGAQDMLIPPERDGLLLEANKRVRMINE
YYWKGLVTEDERYTHAITIWSKTKNEISARMTEGFLAVEENDITYVIDSGARGNWGQVAQ
LAGMKGLVANPSGRTIELPIQSNLKDGFSVLEYFIATHGGRKGKSDTALKTAEAGYLTRR
LVDAVQDILIIAEDCCTMASHTITRKESDEVGEKFESRLFGRTLAADLVANGETLARRND
EVDAVLLQKLQKHKVQEVPVRSIMTCETLRGICQKCYGRDLGDNATVKIGTPVGIIAAQS
IGEPGTQLTMRTFHMGGVAEGSDITQGLTRVEELFEARSPRTPAVLSDIAGQVKVKHQGG
KTQVQIFAQELGEDSYRIPAGHEISVKKGQEVKERTVLARSVMDRSTVKATVAGKVTHAE
NGLVRVRHGSIQERTYEFGGRESLCVRTGDMIKVGDPLNIGHFNLHELLEKKGPYAVQKY
IVQEVQKIYASQGQTINDKHLEIIVKKMFSKVRIIDAGDSDLLPGDTVDISVVDTENQRI
EREHKSKGKFITYESLLLGITRAALATDSWLAGASFQETIRVLVEAATTRRVDNLQDLKA
NVIIGRLIPTGEVYRQRYLSEKAEKAEKAEKAERAEKAGLSVTPESPAPAPQAA
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcccccaagatctctgccgccaccgattccttcgatgccgtcgcgctcagtgtc
gccagccccgaagacgtgctcgcatggagccgcggtgaagtgaccaagcccgagaccgtc
aactaccgcacccagcgtgcggagccggatggcctcttctgcgaacgcatcttcgggccc
accaagaactttcagtgtttctgcggcaagtataaaggagtgcgctactcgggcgtggtg
tgtgagaagtgcggagtggaagtgacgcgctcaatcgtccgccgcgagcggatggggcac
atcaacctcgccgtgccggtcacgcacatctggttcctccgctcatccccctcacgcatc
ggtctcctgctcgatctgccgatcaagactctggagcagatcgtgtacttcgcggcctac
atcgtgatctcggtggacgaagaccagaagaaagaagccgagaaggagctggatgcctct
atggaccagcgcaagaaacaggtgaagagcgagtatgaccaggcgaagaaggagctcaac
gaatccaaggccacgcgtgcccagatggatgcgctggacaaggagtacgccgacaagctc
gagacgctcaaggccaatcaccgcgaggcgctggatgacctgaagaacctgcacgtcggc
gccgtgctctcagaactcaaattccgcgaggtgaacatgaaattcggccacgtgttccgt
gcgggaacgggagccgaatccctcaaagagatcgtcgcgaatatccgtctggatgagatg
tacgaagagctcgcgaaggagcgtactcaggcgagtgggcaacgactgaagaagctgatg
aagcgcatgaagctcgtgatgagcctgaagaaggccatgatcaagccggagtggatgatc
ctcacgcggctgcaggtgattccgccggacctgcgcccgatggtgcagctcgatggcggc
cgcttcgctgcgtccgacttgaacgatctctaccgccgcgtcatcaaccgcaacaatcgt
ctgaagaaactcatgagcatcggcgcgcccgaggtgatctgcagaaacgagaagcgcatg
ctgcaggaggccgtcgacacgctgctcaataactccgcgcgggcgggcaagacgcttttc
acggccggcgaccggcgcaagctgcgctcgctctccgacatgctcaagggcaagcagggg
cgcttccgccaaaacctgctcggcaagcgtgtggactactccggccgttcggtgatcgtc
gtcgggcccgagctcaaactctaccagtgcggtctacccaaagagatggcgatgaagctc
ttcaagccgttcgtcatcggccgcctcatccgcgatgagctcgcccacaacgtgaagggg
gccgagcgtctcgtgcaggatggaggcagggaggtgtgggacattctcgaagaggtgatt
gccggcaagtacgtgcttctcaaccgcgcacccacgctccaccgtctgggtattcaggca
ttccggcccaagctcgtggaagggctcgcgatccgtctgcatccgctcgtgtgtgccgcg
ttcaacgcggacttcgacggagaccagatggccgtgcacgtgccgctctccgaaaaggcg
cagtacgaggctgccacgctcatggccgcacaccagaacctgctcaagccctctgccgga
gaaccgatcatcaatccggcgcaggacatggtgctcggctgttacttcctcacgcaggtg
cacagcggcaagaagggggaggggatggtcttctcatcccccgaagaggcgttcctcgcc
tatgcgcaggatgtggtcgatctgcaggcgaagatcaaagtgcgcacttcactccccggc
gaagagccgaagatcgtcgagacatccgtcgggcgtctccgtttccaggagatcgttcct
ccagccctcggcctcatcaacaagacgatgcgcaagaaagatctgtcggccatgctcgcc
catgcgctggatgtcgtcggacgcgaagaaacggtggaactggcggaccggattaaagat
atcggctttgagtttgccacgatctccggcatttccatcggcgcgcaggacatgctcatc
ccccccgaacgcgatggattgctgctcgaggccaacaagcgcgtgcgcatgatcaatgag
tattactggaagggtctggtgaccgaggatgagcggtacacccacgccatcacgatctgg
tcgaagacgaagaatgaaatttccgccagaatgaccgagggcttcctggccgttgaggag
aacgacatcacctacgtcatcgactcgggcgcacgtggaaactggggacaagtcgcacag
ctcgccggtatgaaaggtctcgtggccaatccttccggccgcacgatcgagctgccgatc
caatccaacctcaaagacgggttctctgtgctcgagtacttcatcgccacgcacggaggc
cgcaaaggaaagtccgatacggccctcaagacggctgaagccggctacctcacgcgccgc
ctcgtcgatgccgtgcaggatattctcatcattgctgaggactgctgcaccatggcctcg
cataccatcacccgcaaggaatccgatgaggtgggcgagaagttcgagagccggctcttc
ggccgcacactcgcagcggatctggtcgcgaacggcgaaacgctggcgcggcgcaatgac
gaggtggatgctgtgctgctccagaagctccagaagcacaaggtgcaggaggttccggtg
cgttccatcatgacctgcgaaacactccgcggcatctgccagaagtgctacggacgcgat
ctcggcgacaacgcgacggtgaagatcggcacgccggttggcatcatcgcggcgcagtcc
atcggtgaaccgggcacgcagctgaccatgcgtaccttccacatgggaggagtcgcagaa
ggttccgatatcacgcagggtctcacccgcgtggaggagctcttcgaggcacgcagcccc
cgcacgccggccgtcctctcggatatcgccggacaggtgaaggtgaagcaccagggcggc
aagacgcaggtgcagatcttcgcccaggaactgggagaggattcgtatcgcattcccgcc
ggtcatgagatttccgtgaagaagggtcaggaggtgaaggagcgcaccgtactggcgcgg
tctgtgatggatcgttccaccgtgaaggccacggttgctggcaaagtgacccatgccgag
aacggtctggtgcgggtccgccacggctccattcaggagcgcacgtacgaattcggcggc
cgcgagtcgctgtgcgtgcgtacgggggacatgatcaaggtgggtgatcccctgaatatc
ggtcacttcaatctgcatgaactgctcgagaaaaagggtccctacgccgtgcagaagtac
atcgtgcaggaagtgcagaagatctacgcttcacagggacagacgatcaacgacaagcac
ctcgagatcatcgtgaagaagatgttcagcaaagtccgcatcatcgacgcgggggacagc
gatctgctccccggcgatacggtcgatatcagcgtcgtggacaccgagaaccagcgcatc
gagcgcgagcacaagagcaaaggcaagttcattacctacgagagcctgctcctcggtatc
acgcgcgcagccctcgccaccgattcctggctggcaggtgcctccttccaagagacgatc
cgcgtgctcgtggaggcagccacaacccgccgcgtcgataacctgcaggatctgaaggcg
aacgtgatcatcgggcgccttattcccacgggcgaggtgtaccggcagcgctacctctca
gaaaaggccgagaaggctgagaaagctgagaaggctgagagagcggagaaggcaggtctt
tccgtgacacccgaaagtcccgcaccagcgccgcaagcggcctga
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