Candidatus Peribacter riflensis: PeribacterA2_0331
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Entry
PeribacterA2_0331 CDS
T04147
Name
(GenBank) DNA helicase II / ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
prf
Candidatus Peribacter riflensis
Pathway
prf03420
Nucleotide excision repair
prf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
prf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PeribacterA2_0331
03430 Mismatch repair
PeribacterA2_0331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prf03400
]
PeribacterA2_0331
Enzymes [BR:
prf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PeribacterA2_0331
DNA repair and recombination proteins [BR:
prf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PeribacterA2_0331
MMR (mismatch excision repair)
Other MMR factors
PeribacterA2_0331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
AAA_12
AAA_22
DUF3799
ResIII
DEAD
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ALM09722
UniProt:
A0A0S1SSC3
LinkDB
All DBs
Position
351515..354484
Genome browser
AA seq
989 aa
AA seq
DB search
MSKKQKAAVRSLSSQAFAERFANLNEGQKRAVETIEGPVMVVAGPGTGKTEVLAMRTANI
LRRTQMRPTNILCLTFSTSGAKAMRERLRQIIGPDAYGVTVSTLHSFCNDLIQQHPQLFV
HFRALEQVSNIERLQIVRRAIKELGQRSELYMPVAEHDRAADVLDRITQMKKEGIHPDDL
LKHVEVYAEELKKTPTGRERDLTSKAYKDDLRKVQQFKEFITVYRAYVGELAASHRYDFD
DMVLIALEALKEHEWLLESLQVRYQYILVDEFQDLNGAQNRLLDLLTTYAYVEQDPNIFV
VGDDDQAIFRFQGANIGNMKSFIDRFPKTSVMTLATNYRSTQPILDAASAVIAANQERLV
HVIKGIEKDLVAGKQKGDVKPQFIRYPDTSTEYAGIAGLLRDGKKRGIPWKEMAVICRRN
EEVLAVADTLTAAGVPTVVAAKQDLIQHPQVLQAVMLLRAIQEPENSSTLAGALALPCFG
CHPAALGKLFIDFRTYKRTTAKVSLHEFLLNQASLPPEIKAAHEFIMRRNQGIPSVTLTA
LVADVLTESRLLPPTDAKEADPRIIAGLHAFYEYVKNRCYEVRTTSLATLLSDIDQYMSE
KKLRLEYDLPHLTQDGVQLMTGHGAKGLEFDVVILSDVRYRNWGNRNSGNSLALPDHLIM
GIDKEVEKRAGQEDERRLFFVAMTRARRELTLAFPETYRSGEQMRDAQVSSFVAEAGESV
GEITLTQEHVPQPMETLRTPPLQIDKAFRAFLQEVLQEYELSVTALNAFLKNPQEFLWEQ
LLQKPSEKKPALAFGTAVHAALEERNSAWQRGETYSVDALVEAFQASLKKEILTREEWEH
YMLVGADILRRYGEKTSSGIPLVLSTERTLHAVVDDVPLKGKVDRIDLFEPNGRACRILD
YKTGQTVKTEDAVRKKEDLFRQLKFYKILCDSDPKFIHEATLFTLDFIGNEDEARREIDL
KITEEEVRELKALIRQVWAKITALDFTAL
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaagcagaaggcagctgttcgttccctttcctctcaggcgtttgcggagcgc
tttgccaacctcaacgaagggcagaagcgcgccgtcgagacgatcgaggggccggtgatg
gtggtggccggtcccgggacgggaaaaacggaggtattggccatgcgcacggcgaatatc
ctgcgccgcacgcagatgcgtccgacgaacattctctgtctcacgttctctacatcgggg
gcgaaggcgatgcgggaacgattgcggcagatcatcgggcccgatgcctacggagtcacg
gtgagcacgttgcacagcttctgcaacgatttgattcaacaacacccgcaactcttcgta
cattttcgtgcgctggagcaggtgagcaacattgaacggctgcagattgtccgtagagca
atcaaagagcttgggcagcgctccgagctctacatgcccgtggcggagcatgatcgggcc
gccgacgtgctcgatcgcatcacgcagatgaagaaagaggggattcaccccgatgatctg
ctgaaacatgtggaggtgtacgccgaggagctgaagaaaacccccaccggcagggagcgg
gatctgaccagcaaggcgtacaaagatgatctcaggaaggtgcagcagttcaaggagttc
attacagtctacagggcgtacgtcggggagctggcggcgagccaccggtacgatttcgat
gacatggtgctcatcgcactggaggctctcaaagagcacgaatggctgctcgaatccctt
caggtgcgctaccagtacattctggtcgatgagttccaggatttgaacggcgcgcagaat
cgtctgctcgatcttctcacgacgtatgcgtacgtcgagcaggatcccaatatctttgtc
gtcggcgacgacgatcaggcgatcttccggtttcagggcgcgaatatcggcaatatgaag
tctttcatcgaccggttcccgaaaacgtcggtgatgacgctcgcgacgaactaccgctcc
acccaaccgatcctggatgccgcttccgctgtgattgctgccaatcaggaacgtctggtc
catgtgatcaaaggcatcgagaaagatctggtcgcgggcaagcagaagggcgacgtaaaa
ccgcagttcatccgctatcccgatacgagtacggagtatgcgggcatcgcagggcttctc
cgggacgggaagaagcggggaatcccgtggaaggagatggccgtcatctgccgccggaac
gaagaagtgctggcggttgccgacacgctgactgccgccggcgttcccactgtggtcgct
gccaagcaggatttgatccagcacccgcaggttctgcaggcggtgatgctgctgcgcgcg
attcaggaaccggagaattccagtacgctcgctggtgcgctcgccctcccgtgcttcggg
tgtcatccggcggccctggggaagttgttcatcgatttccgcacgtacaagcgcacgacg
gcgaaagtgagcctgcacgaattcctgttgaatcaggcgtcactccctcccgaaatcaaa
gccgctcacgagttcatcatgaggaggaatcagggtattccaagtgtgacactcacggcg
ctcgtggcagatgtcctcacggaatcacgactcctgccgcccacggatgccaaagaagcc
gatccgcgcatcatcgcgggcctgcacgcgttctacgagtacgtgaagaaccgctgttac
gaagtgcgaacgacgtcgctcgctacccttctctccgatatcgatcagtacatgagcgag
aagaaactgcgcctggagtatgacctgccgcatcttacgcaggatggtgtgcaactgatg
accgggcacggagccaaggggctggagttcgatgtggtgatcctctctgatgtccggtac
cgcaactggggcaacaggaacagcggcaattccctcgcgctccccgatcacctgatcatg
ggaatcgataaagaagtggagaagagggcggggcaggaagacgagcgcaggctcttcttc
gtggcgatgaccagagcgagacgggagcttactctggcctttccagaaacgtaccgcagt
ggcgaacagatgcgcgatgcgcaggtgagcagtttcgtggcggaggcaggagagagcgtg
ggtgagatcacgctgacccaggagcatgttccgcagccgatggagaccctgcgcaccccg
ccgctccagatcgacaaagctttccgcgcgttcctgcaggaagtgctgcaggagtacgag
ctctcggtaaccgcactcaatgcgtttctgaaaaacccgcaggaatttctgtgggagcag
ctgctgcagaaaccgagcgaaaagaaacccgccctggcctttggtaccgcggtccatgcc
gccctcgaagaaaggaattccgcatggcagcgcggagaaacatactctgtcgacgcgctg
gtggaggcctttcaggcctctctcaaaaaagaaatcctcacccgtgaggaatgggaacac
tacatgctggtcggcgcagatattctgcggaggtatggagaaaaaacctcttcgggcatt
ccactcgttctctcgacggaacggacgctccatgcagtggtggatgacgttccgctcaag
ggcaaggtggaccgcatcgatctctttgagccgaacggcagggcgtgccggatactggac
tacaaaacgggccagacggtgaaaacggaggacgcagtacgcaagaaggaagatctgttc
agacagctgaagttctacaaaattctctgtgacagcgatcccaagttcattcacgaagcc
acactcttcacgctcgatttcattggcaacgaggatgaggcgaggagggagattgatctc
aaaattacagaagaggaagtgagagagctgaaagcgctgatcaggcaggtgtgggccaag
atcacggcgctggatttcactgcgctgtag
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