Candidatus Peribacter riflensis: PeribacterA2_0757
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Entry
PeribacterA2_0757 CDS
T04147
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
prf
Candidatus Peribacter riflensis
Pathway
prf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PeribacterA2_0757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prf03019
]
PeribacterA2_0757
03016 Transfer RNA biogenesis [BR:
prf03016
]
PeribacterA2_0757
Enzymes [BR:
prf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PeribacterA2_0757
Messenger RNA biogenesis [BR:
prf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PeribacterA2_0757
Transfer RNA biogenesis [BR:
prf03016
]
Prokaryotic type
tRNA degradation factors
PeribacterA2_0757
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
OB_RRP5_4th
KH_2
Motif
Other DBs
NCBI-ProteinID:
ALM10122
UniProt:
A0A0S1SKN4
LinkDB
All DBs
Position
complement(803742..805994)
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AA seq
750 aa
AA seq
DB search
MPILSRSPSASVQKEFTLMLGDQELKFKTGLIGTQANATVLCQMGGTVAMSNVTVSAKPR
VGVDFLPLQVVFQEKYYAGGRIGGSRFRKREGRPADQFVLLGRVVDRGLRPMLPKHIRND
IQVFCTVLSYDNEQEYDIAAANAANLAVSLSDCPAAGPLGTVRVGLIGGELVLNPTREAR
TKSDLDMFVTATPERVVMIEAGANQVPEAEILKAIQFGKKWAQKIATFFADLQKKEGKKK
FEVAPPYENKEASALLKEWALSTVNKAIKDPLKKLDRRIIFNGFMDGAAEKLQEKYGLAG
EKEELIELYAHASDLMDKIIKAEVRRLILEEGIRMSSRKVNEIRPITATLDPLPNFVHGS
ALFQRGETQGLTTCTLGAPGDKQIVEGMAGEYKMRYMHHYNFPPFSVGETSNRLMVGNRE
IGHGSLAQRALEPVLPTEENFPYTIRTVTEILESNGSSSMAATCGSTLALMAAGVPISAP
VAGIALGLISDEEKGKYVILSDLQDEEDFGGDMDFKVGGTEKGVTAIQMDIKLKGLPDSV
FEEAITRSREGRLEIMKVMTAAIAEPRKELSPHAPRIEVIQINPEDIRLVIGKGGEMIQK
ITGELGVEIDIEDSGLIFVTALNGDSMQKAKEWIQGIVAKPEIGKVYDCKVVRIIDGVGA
IVEFLRGKDAMIHISELQWPRTEKVEDVLKMGDEVKAKCVEYDPIDGKTRMSLKQMSEPP
EGFSMPPRRTGPGGPPRGGFGGGRRGPPRR
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgcccatactctcccgttcgccttctgccagcgtgcagaaggaattcaccctgatgctc
ggcgatcaggagttaaaattcaagaccggtctcatcggaacgcaggccaatgccaccgtg
ctctgccagatgggcggaaccgttgccatgagcaacgtcaccgtgagtgccaagccccgc
gtgggtgtcgacttcctgccgctgcaggttgtttttcaggagaagtactacgccggaggg
cgtatcggcggcagccgcttccgcaagcgcgaaggccgcccagccgatcagtttgttctg
ctcgggcgcgtggtggacaggggtctccgtcccatgcttcccaagcacatccgcaatgac
attcaggtcttctgcacggtgctctcgtacgacaatgagcaggagtacgatatcgcggcg
gcgaacgcggccaatctggccgtttcgctctccgactgtccggcggcaggcccacttgga
acggtgcgtgtcggactcattggaggtgagcttgtgctcaatcccactcgcgaggcgagg
accaagagcgacctcgatatgttcgtcacggcaacgcccgagcgcgtggtgatgatcgaa
gccggggccaatcaggtacccgaggccgagatcctcaaggccatccagttcggcaagaag
tgggcgcagaagatcgccacgttcttcgcagatcttcagaagaaagaaggcaagaagaag
ttcgaggttgcgccgccctatgagaacaaagaggcctccgcactcctgaaggagtgggcc
ctttccaccgtgaacaaggcgatcaaggatcccttgaagaagctcgatcgccgcatcatc
ttcaatggtttcatggatggggcagcggagaagctgcaggagaaatacggtcttgccggg
gagaaggaggagctcatcgagctctacgcgcacgcatccgacctcatggacaagattatc
aaggccgaagtgcgccgtctgatcctcgaagaggggatccgcatgagcagccgtaaagtg
aatgaaatccgccccatcacggccaccctcgatccgctgccgaatttcgtgcacgggtcc
gcgctcttccagcgcggcgagacgcaggggctgaccacctgcacgctgggtgcgcccggt
gacaagcagatcgtcgagggcatggcgggcgagtacaagatgcgctacatgcaccactac
aacttcccgccgttctcggtgggtgagacgagtaaccgtctcatggtgggcaaccgcgaa
atcggccacggcagtctggcgcagcgcgccttggagccggtgctcccgacagaagagaac
ttcccctacaccatccgcacagttaccgagattctggaatcgaacggttcctcctccatg
gcggccacctgcggctccacactcgcgctcatggcggccggcgtgccgatcagtgcgccc
gttgccggaatcgcgttgggcttaatttcggacgaggagaagggcaagtacgtgatcctc
tcggacctgcaggatgaagaggacttcggtggcgacatggatttcaaagtcggtggtacc
gaaaagggtgtcacggccatccagatggatatcaagctcaaggggttgccggatagcgtg
ttcgaagaggccatcacccgcagccgtgaaggccgactcgagatcatgaaggtcatgacg
gctgccattgcagagccgcgcaaggagctctcgccgcatgcaccgcgcatcgaggtgatc
cagatcaatccagaggatattcgcctcgtcatcggcaagggcggcgagatgatccagaag
attaccggtgaactgggagtcgagatcgacatcgaagacagcggcctcatcttcgtcacc
gcactcaacggcgactcgatgcagaaggccaaggagtggattcagggcatcgtggccaag
ccggaaatcggcaaggtgtacgactgcaaagtcgtgcgcatcattgacggcgtgggggcg
atcgtggagttcctgcggggcaaagatgccatgatccacatcagcgagcttcagtggccg
cgtacggagaaggtggaagatgttctcaagatgggcgacgaagtgaaggcgaagtgcgtc
gaatacgatccgatcgacggcaagacgcgcatgtccttaaagcagatgtccgagccgccc
gagggcttcagcatgccgccgcgccgcaccggcccgggagggcctccgcgtggcggattc
ggtggcggaaggcgcgggccgccgagacgatag
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