Candidatus Peribacter riflensis: PeribacterA2_1007
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Entry
PeribacterA2_1007 CDS
T04147
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
prf
Candidatus Peribacter riflensis
Pathway
prf03030
DNA replication
prf03430
Mismatch repair
prf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
prf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PeribacterA2_1007
03430 Mismatch repair
PeribacterA2_1007
03440 Homologous recombination
PeribacterA2_1007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prf03032
]
PeribacterA2_1007
03400 DNA repair and recombination proteins [BR:
prf03400
]
PeribacterA2_1007
Enzymes [BR:
prf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PeribacterA2_1007
DNA replication proteins [BR:
prf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PeribacterA2_1007
DNA repair and recombination proteins [BR:
prf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PeribacterA2_1007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
HHH_3
T2SSK
Motif
Other DBs
NCBI-ProteinID:
ALM10366
UniProt:
A0A0S1SJ52
LinkDB
All DBs
Position
1058698..1062495
Genome browser
AA seq
1265 aa
AA seq
DB search
MKATDFVHLHCHSTYSLLEALPSPEEIVERAKELGQTAVGIADKGYVYGLVEFYQAAKKG
GLKPILGLETYVAARTRFDQESGTDTKRYPLVLLAENEEGYSNLLALATQAALEGMYYKP
RVDAELLSKYGKGLIALTGPIGGAIPQAALVEDGERIQELTEQYRSYFGEKNLYFELMEL
TGVTGQAEVNQQLISWGKKLNVPLVATCSSHYCRPQDSEAHDVLLCIQKNANVADPTRFS
MRDSDFSMRPFTELECTFAHVPEALQNTRVIADRCSVTLELGKYRIPRYPVPKDTTEESE
LSRLAGEGFAQRYPNATQEQKDRLKHELSVINSMGFAGYFLIVADFINEAKRRGIAVGPG
RGSAAGSIVSYSLNITTLDPLEHGLLFERFLNPERISMPDIDTDFADTRRDEVLEYVRDK
YGNDRVVQICTFGTLAARAAVKDVGRAYGVPFLEMNALAKLIPERPGTTLKDAMETTELK
AAYDSNETYRKIIDTAFKLEGKARHVSVHACGVIITPEPTVHFSALQRAPKDENIIITQY
EAKPLEALGLLKMDFLGLTNLTVIQTTLEIIQRLYGTQLDMANLPMNDKATYELLQRGDT
TGVFQLESAGMRRYLKQLIPTTFNDITAMAALFRPGPMEWIPSFIKRKHGKEQVEYLHKD
VEPIFRETYGIGVYQEQILQLARVFAGYSLGEADLLRRAIGKKIKKELDAQRDKFIAGAA
KKGHGQALAEKIFDDVILPFAGYGFPKAHAAGYARIAFETAYLKAHFPTEFMAALLSSDA
QRTDRVMIEIEECRQMSIQVLPPDINESLRHFTALPPEGATLAHGTAQKGSIRFGLSAIK
GIGDSSVQQLIAVREAGGKFKSIEDFARRVPSKVLNKKLLEALVKSGALDSLGERRALVE
HYELIIDYAKSSGNVSAAQSDLFASAGTKLDDATIEFPHTTEATSLQKLQWEKETLGMYV
SSHPLAGLKKYIAKKAQLIADLTAKDAGKKIKLAGLVESIKRITTKKGETMAVILLEDPT
GKIEATLFPRVYGEFANLLELPDSVLVVGGTIDMRAGQLQMRADALKRAVLSTMITHAKE
EGFFDEEEAKHGLSISRKRLEETEQVELVDEEGNVIAGETVTLGNSQNGQDEFLGPLGQW
LLQGMPTTEVLTALGFSAQESSESPAQADSSKPEKKTLKKKEGDAPTEPRTYSTEISIHT
IALPERAPKKLLLDLKHVLETFPGKEKVQLKIGEQLIPLPLTINMSTILEKKIEEVLSAY
ASPAA
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgaccgactttgtccacctgcactgccattcgacctactccctcctcgaggca
ctcccgagcccggaggaaattgtggaacgtgcaaaagagctgggtcaaaccgccgtcggc
atcgccgacaaagggtacgtctacgggctggtggagttctatcaggcagcaaaaaagggt
gggctgaagcccattctgggtctcgagacgtacgtggcggcccgcacgcgcttcgaccag
gaaagcggaacggatacgaagcgctacccactcgtgctcctcgcggaaaatgaagagggg
tactcaaaccttctcgcgctcgccacgcaggccgcgctcgagggcatgtactacaagccg
cgtgtggatgccgaactcctgagtaaatatggcaaaggtctcattgcgctcaccgggccg
atcggaggggcgatcccgcaggccgcgctggtggaggacggcgagcgcattcaggaactc
accgaacagtaccgttcgtacttcggcgaaaagaacctctacttcgagttgatggaactg
acaggggtgaccgggcaggccgaggtgaatcagcagctcatcagttggggaaagaagctc
aatgtccctctggtggcgacgtgctccagccactactgccgcccgcaggattccgaggcc
cacgatgtgctcctgtgcattcagaagaacgcaaacgtcgccgatccaacgcgcttttcg
atgcgtgacagtgatttttccatgcgcccgtttacggagctggagtgtacattcgcccac
gtacccgaagcgctgcagaatacgcgcgttatcgccgaccgctgctccgtcactctggag
ttgggaaagtaccgcattccccgttacccggtgccaaaggacaccaccgaggaatccgag
ctctcccgtctcgcgggagaaggtttcgcacagaggtaccccaatgccacgcaggaacaa
aaggatcgcctgaagcatgagctttccgtcatcaacagcatgggattcgccggatacttc
ctcatcgtggccgatttcatcaatgaggcgaagcggagggggattgcggtgggacccggg
cgcggatcggctgccgggtccatcgtgtcttacagcttgaacatcacgacgcttgatccc
ctggaacacgggctcctcttcgagcgatttctcaaccccgagcgcatctcgatgccggat
atcgatacggattttgccgatacgcggagagatgaagtgctggaatatgtccgcgacaag
tacggcaatgaccgggtcgtgcaaatctgcacgttcggaacgctggcggcccgggcggcc
gtgaaagacgtgggccgcgcctacggcgtgccgtttctcgaaatgaatgcgctggcgaag
ctcatccccgaacgtcccggcacgacactcaaggatgccatggaaacgacggaattgaag
gcggcctacgacagcaacgagacgtaccggaaaatcatcgacaccgcgttcaagctggag
ggaaaagcgcgccatgtttcggtgcacgcctgcggcgtgatcatcacgccggaacccaca
gtgcatttctccgcgctccaacgcgctcccaaagatgaaaatatcatcattacacagtac
gaggcgaagccactggaggcgctggggcttctgaaaatggacttcctgggactcacgaac
ctcacggtcatccaaaccacgctggaaatcattcagcgtctgtacggcacacagttggat
atggccaacctgcccatgaatgacaaggcgacgtacgagctcctccagcgcggagatacg
acgggcgtgtttcagctggaatccgccgggatgcggcggtacttaaagcagctcatccct
acgacattcaacgacatcaccgcaatggcggcgctcttccgcccggggcccatggaatgg
attccgagttttatcaagcgcaaacacgggaaagaacaggtggaatacctccacaaggat
gtggaacccatcttccgcgagacctacggcatcggcgtttaccaggagcaaatcctgcag
ctcgcgcgtgtgttcgccggttattcattgggagaagcggatcttctgcggcgtgccatc
ggaaagaaaatcaagaaagagctcgacgcgcagcgagacaagttcatcgcgggcgcggcg
aagaaaggacatgggcaggcgctggcagagaagatctttgacgatgtcatcctgccattc
gccggatacggattccccaaagcgcatgctgccggctacgcgcgcatcgcgtttgaaacc
gcatacttgaaggcgcacttcccgacggaattcatggccgcgctcctctcgagtgacgcg
cagcggacagaccgcgtaatgatcgaaattgaagaatgccgccagatgagcattcaggtg
ctcccgccagatatcaatgaatcgctccgccacttcaccgccctcccgccggaaggagcc
acactggcacacgggacggcgcagaagggatcaatccgcttcggattgagcgccatcaaa
ggcattggcgacagctcggtgcagcagctcatcgccgttcgcgaagcaggcgggaaattc
aagtccatcgaggatttcgcgcggcgcgttccctcgaaagtgctcaacaaaaaactgctc
gaggcgctcgttaaatccggcgcgctcgactcgctcggcgagcgcagagcactggtggag
cactatgagctcatcatcgattacgctaaatccagcgggaatgtttccgccgcccagagt
gacttattcgcctctgccggcacgaagctcgacgatgccaccatcgagttcccgcacact
accgaggccacgtccctgcaaaaattacagtgggaaaaagaaacgctcggcatgtacgtc
agcagccatccccttgcgggtctcaagaaatacatcgccaaaaaagcccagctcattgca
gatctcaccgccaaagacgctggaaagaaaatcaagctggcgggactggtcgagagcatc
aagcgcatcacgacgaagaagggcgagacgatggctgtcatccttctggaggatccgaca
ggcaagattgaggcgacgctctttccaagggtctatggcgagttcgccaatctgctggag
ctgccagattcggtgctcgttgtaggagggacaatcgatatgcgagcgggacaattgcag
atgcgggcggatgcgctcaagcgcgcggtcctctcgaccatgatcacccatgccaaagag
gaagggttcttcgatgaagaggaagccaagcacggcctttcgatctcgcgcaagcgactg
gaagagactgagcaggtggagttggtggatgaggaggggaatgtcatcgccggtgaaaca
gtgacgctggggaacagtcagaacgggcaggacgaattcctcggcccactggggcaatgg
cttctgcagggcatgccgacgacggaggtgctcacggcactgggcttctcggcccaggaa
tcttctgaatcgcctgcacaggcagactcatcaaagcctgagaagaaaaccctgaagaaa
aaggagggcgatgcgccaacggagccccggacctactccaccgaaatctccattcacacg
atcgcgctcccggagcgcgcgccaaaaaaactcctgctggatctcaagcacgtgctcgaa
accttccccggaaaagaaaaggtgcaattgaagatcggcgagcagctcattcccctcccg
ctcaccatcaacatgtccaccatcctcgaaaagaagatcgaggaagtgctcagtgcgtat
gcctctcccgccgcctga
DBGET
integrated database retrieval system
