Providencia rettgeri: RB151_025400
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Entry
RB151_025400 CDS
T04571
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
prg
Providencia rettgeri
Pathway
prg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RB151_025400 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prg03400
]
RB151_025400 (mfd)
Enzymes [BR:
prg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RB151_025400 (mfd)
DNA repair and recombination proteins [BR:
prg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RB151_025400 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
APC12211
UniProt:
A0A1J0E891
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All DBs
Position
2743880..2747323
Genome browser
AA seq
1147 aa
AA seq
DB search
MSSKFRYELPSRSGDVRHLGCLIGAAGALECGEMIQRHQGPVVIVTRDMQNTLRLRDEIQ
QFTHHPIETLSDWETLPYDNFSPHQEIISHRLSTLYRLPSMQKGALILPVNTLMQKVCPP
DFLTSHALVMAKGDKLSRDNLRAELDKAGYRHVEQVLEHGEYATRGALLDLFPMGSTLPF
RIDFFDDEIDSLRTFDVDSQRTLEEVSHINLLPAHEFPTDKDAIERFRSQWRERFDVRRD
PEHIYQQVSKNTLPTGIEYWQPLFFSQPLPSLFDYLPSSSLLVSQNLQEAAERFQLDTLQ
RYDSRRVDPMRPLLPPTDLWLTVEQLNQSLKQWPRVQLSTESLAPKAANTNLDYLPLPDI
STQGQSKTPLDKLRQFTEQFDGKIIFSVESEGRRETVTELLARLKIRPEIIEHYASHIDS
RFAITIGAAEHGFIQVDAHKALICESDLLGERVVRRRTDNRRTINTDTLIRNLAELRPGQ
PVVHIEHGVGRYQGLITLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYAGGADENAP
LHKLGSDSWGRARQKAAEKVRDVAAELLDIYAQRAAKAGFAFKQDKEQYQEFCQGFPFET
TPDQEMAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAINNNKQVAVLVPTTLL
AQQHYDNFKDRFANWPVRIEMLSRFKTAKEQQQIIAETAEGKVDILIGTHKLLQSDLVWK
DLGLLVVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA
RRLAVKTFVRQYDELVVREAILRETLRGGQVYYLYNDVENIEKAKARLEELVPEARFVVG
HGQMRERELERVMTDFHHQRFNVLICTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG
RVGRSHHQAYAYLLTPHPKAMTTDAHKRLEAISSLEDLGAGFALATHDLEIRGAGELLGE
DQSGQMTTVGFTLYMELLESAVEALKEGREPSLEDLTSQQTEVELRMPVLLPDDYIHDVN
MRLSFYKRIASAKDNQELNELRTELIDRFGTLPDAGKFLLTSAAIRLQAQALGIKRIEAH
EKGGFIEFSEKNKVEPGFLISLLQNQPQTYRLEGPVRLKFFHDLAERTTRLEFIKQLLTS
FEEHQLT
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcaaaatttcgttatgaactccctagtcgtagtggcgatgtccgccatttaggt
tgccttatcggggcggctggtgcgcttgaatgtggagaaatgatccaacgtcatcaaggg
cctgttgttattgtcactcgtgatatgcaaaatactttgcgcttacgtgatgaaattcaa
caatttacacatcaccctattgaaaccctttctgattgggaaacattgccttatgacaat
ttctccccacatcaagaaatcatttctcatcgtttatcaacactataccgcttaccatct
atgcaaaaaggcgcattaatccttccggttaatacgcttatgcagaaagtttgtccccct
gattttttaactagccatgcattggtcatggcaaaaggcgataaactttcccgtgataat
ttacgtgccgaattagacaaagcaggctatcgccatgttgagcaagttctagagcatggc
gagtatgcaacccgtggggcgttattagatttattcccaatgggcagtacattaccattt
cgtattgatttttttgatgatgaaattgatagtttgcgaacttttgacgttgactcacaa
cgaacacttgaggaagttagccatatcaatctcctccctgctcacgagtttccaacggat
aaagacgcaattgaacgtttccgtagccagtggcgggaacgctttgacgttcgccgtgac
ccagagcacatttaccagcaagtcagtaaaaatacgttaccaactggtatcgaatattgg
cagcctttatttttttcacagcctctgccctcgttatttgattatttaccgtcatctagt
ttattggtttcacaaaatctacaagaagccgcagaacgctttcaactcgatacgttgcaa
cgttatgatagccgtagggttgacccaatgcggccattactcccccctacagacttatgg
ttaaccgttgaacagctcaaccaatcattaaaacaatggcctcgtgttcaattatccact
gaatctttagctcccaaagccgctaatacgaatttagactatttaccgctaccggacatc
agtactcaaggccaaagcaagacccctttagacaaacttcgtcaattcacggaacagttt
gatggcaagatcatcttttctgtggaaagtgaaggtcgccgtgaaacagtcacggaactg
ttagctcgcttgaaaattcgccctgaaattattgagcattacgcaagtcacattgatagc
cgttttgctattactatcggcgcagctgagcatggttttattcaagtcgatgcccataaa
gcgttgatatgcgaaagcgacctgttaggtgaacgcgttgttcgtcgtcgtactgataac
cgccgaacaattaataccgatacactgatccgtaacttagctgaattacgtccggggcaa
cccgtcgtccatattgaacacggcgttggtcgctatcaagggttaatcaccctagaagcc
ggtggcattaaagcagaatacttaatcttaacttatgcaggtgaagataaactctatgtt
ccggtctcgtcactgcatttaattagccgctatgcaggtggtgcggatgaaaatgcgcca
ctacataagctaggcagtgatagctggggacgtgcccgccaaaaagcggctgaaaaagta
cgtgatgttgcagcagagctgctggatatttacgcacagcgtgcagccaaagcgggcttt
gccttcaaacaggataaagaacagtaccaagagttttgccaaggttttcctttcgaaaca
acccctgaccaagagatggcaattaatgctgtactcagtgatatgtgccaaccattagct
atggataggttggtatgcggtgatgttgggttcggtaaaaccgaggtggctatgcgtgca
gcattcctagctatcaacaataataagcaggtagctgttttagttccaaccaccttactt
gcacaacagcattatgataatttcaaagaccgattcgccaattggcctgtgcgtatagaa
atgttgtctcgctttaaaacggcgaaagagcagcaacagattattgctgagactgcagaa
ggcaaagttgatattttaattggcactcataaactgctacaaagtgatttagtatggaaa
gatttgggcttattggtagtagatgaagagcaccgctttggcgtccgtcataaagaacga
ataaaagctatgcgtgcagacgttgatattttaacacttacagcaacccctattcctcgg
acactgaatatggcaatgagtggtatgcgcgatctatccattatcgccacgccgccagca
cgccgtttagctgtaaaaacctttgttcgccaatatgacgagctcgtggtacgtgaagcc
attttacgtgaaacactacgtgggggccaagtttactacttatacaatgatgttgaaaat
attgaaaaagccaaagcgcgccttgaagaactagtccctgaggctcgtttcgttgttggt
catggccaaatgcgggagcgggaattagaacgggtgatgaccgacttccatcatcaacgt
tttaatgtcttgatatgtacgactattatcgaaacgggtatcgatattcctactgcaaat
accattatcattgaacgagctgaccattttgggttagcacaattgcatcaattacgtggt
cgagtcggccggtcacaccaccaagcttatgcttacttactcacaccgcatcctaaagca
atgacaacagatgcccacaagcgtctcgaagccatttcttcacttgaagatttaggggct
gggttcgcacttgcgactcatgatttagaaattcgaggtgcaggagaattacttggcgaa
gaccaaagcgggcagatgacaactgttggctttaccttatatatggaactgttagaaagc
gcggtcgaggccctaaaagaagggcgtgaaccttcactggaagacttaactagccaacaa
actgaagttgagctacggatgccggttcttttgcctgacgattatatacacgatgtaaat
atgcgactgtctttttataaacggatagccagtgcaaaagataatcaagaattaaacgaa
ttacgtaccgagttaattgaccgttttggcaccctccctgatgcaggcaagttcctttta
acgtctgctgcaattcgtttgcaagctcaagctttaggtattaagcgcattgaagcccat
gagaaagggggttttattgagtttagtgagaaaaataaagtcgaaccgggcttcttgatc
agcttgttacaaaatcaaccacaaacttatcgcttagagggtcccgtccgactgaagttt
ttccatgatttagcggaaaggacaactcggcttgagtttataaaacaactattaaccagt
tttgaagaacaccaattaacctaa
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