Providencia rettgeri: RB151_025650
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Entry
RB151_025650 CDS
T04571
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
prg
Providencia rettgeri
Pathway
prg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RB151_025650 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prg03019
]
RB151_025650 (rne)
03009 Ribosome biogenesis [BR:
prg03009
]
RB151_025650 (rne)
Enzymes [BR:
prg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RB151_025650 (rne)
Messenger RNA biogenesis [BR:
prg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RB151_025650 (rne)
Ribosome biogenesis [BR:
prg03009
]
Prokaryotic type
rRNA processing factors
RB151_025650 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
APC12236
LinkDB
All DBs
Position
2770988..2774278
Genome browser
AA seq
1096 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPIKEIAREYFPSNYHSQGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGEDRTELKEALSSLEIPDGMGLIVRTAGVGKSAESL
QQDLLYRLRHWDAIQKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVVEMA
RNHIEAIGRGDFASKIKHYSGDVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALT
AIDINSSRSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLREAVRQDRARIQIARISRFGLLEMSRQRLSPSLGESSHHVCPRCMGTGTIRDNESLS
LSVLRLIEEEALKENTHEVHAIVPVQIASYLLNEKRKAVSDIEQRQSHVRVVIVPNDQMQ
TPHFHVIRIRKGEEVNTLSYNLAQYHETETLNQIDETTAERKLPEQPAISAFALQEPVDM
PAVKPKETVSKTPAKPVTTEQATPGLFSKIAAFFKKLFGEEEEKVVEKPAPKPRNNNDRR
RNNDRRRNNDRRNNNRRDRDDNENRETRDNRDNRNNRNATADETNNRNKGRNNKNTSQQD
EQTTDSNNRDNQQQRREQRAERRRRQDEKRQQQAAKAQQDAQQDNVENVAEKEEQQRPVT
PRRQRRQLSQKIRVTDNDQVVDSVETSQEVVATQPLAALPVVVTPVNQSEGEVKTEDLQG
VNTHADDEEKQDTIIPRRSRRSPRHLRVSGQRRRRYRDERHLNKSPMPLIAAVASPELAS
GKVFIHYPIAQPQQEGMAIITNEEMLEQQSVDEASSAEKTKVTASQPEVIVPAVTATAVE
VTQVEVSETVASPVVEAEVKAPADEQPVEAVPVEIEAVEVTQSENTLTETTAIVEKAPET
TEQVIESPVESVVKSETTELVVEEAPAQTEAVDETVTQFVEETSTSEVIVETAKEPVIVK
EVEPVKVTESTVVAVSLHKRHAYSPMTKAPAPETSGAPFEIKEYLRDASTFEGKGGAGGH
VASNVATSEMAKPADF
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaataaacgcaactcaacaggaagagttgcgtgttgcccttgtagac
gggcaacgtctttatgatctggatatcgaaagtccaggtcatgagcaaaaaaaggccaat
atttacaaaggtaaaatcacccgcattgaacccagtcttgaagccgcatttgttgactac
ggcgctgaaaggcacggtttccttcctatcaaagaaatcgctcgtgaatacttcccaagc
aactaccactctcagggccgtcctaacattaaagatgtgttaaaggaaggccaagaagtt
attgtccaagttgataaagaagaacgaggcaataaaggtgcagcactaacgacctttatt
agtttggctgggagctatttagttttaatgccaaataaccctcgcgcaggggggatttcc
cgtcgtattgaaggtgaagaccgtacagaacttaaagaagctttatcttctttagaaatt
ccagacggtatggggttaattgtccgtactgcaggtgtaggcaaatcagcagaatcactg
caacaagatttactttatcgcttacgccattgggatgctatccaaaaagcggctgaaaac
cgccctgcaccgttccttattcatcaagaaagtaacgttattgttcgtgcgttccgtgat
tatctacgccctgacattggtgaaattcttattgataacccgaaagtggtcgaaatggct
cgtaaccatattgaagctatcggtcgcggtgatttcgccagcaaaattaaacactatagt
ggtgatgttcctttatttagccattatcaaatcgagtcgcaaattgagtctgcattccaa
cgtgaagttcgtttgccttcaggtggcgcattagtcatcgatacgactgaagcattaacc
gctatcgatatcaactcctcacggtcaacccgtggcggtgatatcgaagaaactgcattc
aataccaacttagaagcggctgatgagattgctcgccagctacgtctacgtgacttgggc
ggtttgattgtcattgactttatcgatatgacaccggttcgccatcagcgtgaagttgaa
aatcgtctacgtgaagccgtacgacaagaccgtgcgcgcattcaaattgcacgtatttct
cgtttcggtttactggagatgtcacgtcaacgtttgagtccttctcttggtgagtcaagc
catcacgtctgccctcgttgcatggggacagggacaattcgtgataacgagtcactatcg
ttgtctgtgcttcgtcttattgaagaagaagccttaaaagagaatacccatgaagtacac
gcgattgtgccagtccaaatcgcgtcttatctactaaacgaaaaacgcaaagcagtcagt
gatattgaacaacgccaaagccatgtgcgtgtggtgattgtccctaatgaccaaatgcaa
acgcctcacttccatgtgatccgtattcgtaaaggcgaagaagttaacactctaagctac
aatttagcgcaatatcatgagacagaaacgttaaatcaaattgatgaaacgactgcagag
cgtaaacttcctgagcaaccagcgatttcggcttttgccctgcaagaacctgtcgacatg
cctgcggtgaaacctaaagaaaccgtttcaaaaaccccagcaaaacccgtgacaacagag
caggcaacgccaggcttattcagtaaaattgcggccttcttcaagaagctatttggtgag
gaagaagaaaaggtggttgagaaaccagcaccgaaacctcgcaataataatgaccgccgc
cgtaataacgatcgtcgtcgtaacaatgatcgccgtaataataaccgtcgtgaccgcgat
gataatgaaaatcgcgaaactcgtgacaatcgcgacaatcgcaataatcgtaatgcgact
gcggatgaaaccaacaatcgtaataaaggccgtaataataaaaatacgagccaacaagat
gagcaaacaactgatagcaacaatcgcgataatcagcaacaacgtcgtgagcaacgtgca
gagcgtcgtcgccgtcaggacgaaaaacgtcagcagcaagctgcaaaagcacaacaagat
gctcaacaagataacgtcgaaaatgttgcggagaaagaggaacaacaacgccctgttaca
cctcgtcgccaacgtcgccagttatcacagaaaatccgtgttaccgataacgaccaagtt
gtagattcggttgaaacatcacaggaagtggtggctacgcaacctcttgccgcattgcct
gtcgttgtaacgcctgtcaatcagtctgaaggtgaagttaaaacagaagacctgcaaggc
gtaaacactcatgcagatgacgaagaaaagcaagacaccatcattcctcgtcgttcacgt
cgttcgccacgccacttacgcgtaagtgggcaacgtcgtcgtcgctaccgtgatgagcgt
catttgaataagtcgccaatgccattaatcgctgcggttgcctcacctgaactagcatca
ggtaaagtatttattcattatcctatcgcccaaccacaacaagaaggtatggcgatcatt
actaatgaagaaatgctggaacaacaaagtgttgatgaagcctcttcggctgaaaaaaca
aaagtgacagcgtcacagccagaggttattgttcctgctgtaacggctaccgctgttgag
gttactcaggtagaagtatcagaaacggttgcatcccctgttgtggaagctgaagttaaa
gcccctgccgatgaacaaccagtagaagcagtacctgttgagattgaggccgttgaagtg
actcaatctgaaaacacactaactgaaactacagcaatcgtcgagaaagcgcctgaaaca
acagagcaagtgattgagtctcctgttgaatctgttgttaagtcagaaacaactgagctc
gttgtagaagaagctcccgctcaaactgaagctgttgatgaaactgtgactcaattcgtt
gaagaaacatcaacgtctgaggttatcgttgagacagcaaaagagcccgtaatagttaaa
gaggttgaacccgttaaggtcaccgaatcaactgttgtcgctgtaagcttacataaacgc
catgcgtattcaccaatgactaaagcgcctgcccctgaaacttcgggtgcgccatttgaa
attaaagaatacctacgcgatgcctcaacctttgaaggtaaaggtggcgcaggtggccat
gttgcttcaaacgtcgcaacctctgaaatggcaaaacctgctgatttctaa
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