Providencia rettgeri: RB151_040990
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Entry
RB151_040990 CDS
T04571
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
prg
Providencia rettgeri
Pathway
prg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RB151_040990 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prg03019
]
RB151_040990 (deaD)
03009 Ribosome biogenesis [BR:
prg03009
]
RB151_040990 (deaD)
Enzymes [BR:
prg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RB151_040990 (deaD)
Messenger RNA biogenesis [BR:
prg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RB151_040990 (deaD)
Ribosome biogenesis [BR:
prg03009
]
Prokaryotic type
rRNA helicases
RB151_040990 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
DRTGG
CDC37_C
Motif
Other DBs
NCBI-ProteinID:
APC13745
LinkDB
All DBs
Position
complement(4392025..4393950)
Genome browser
AA seq
641 aa
AA seq
DB search
MTTETDISFADLGLSASILTALNDLGYEKPSPIQQQCIPLLMDGNDVLGMAQTGSGKTAA
FSLPLLQNIDPDLKAPQILVLAPTRELAVQVAEAMSDFSKHMSRVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMGQIPA
EHQTALFSATMPEPIRRITRRFMKEPKEIRIQASITTRPDIAQSYWTVYGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
VERTMKLTIPEVELPNADLLSQRRQEKFAEKIQQQLESSDLDQYRSLLAKMSPSEDVDME
TLAAALLKMAQGERALILPPDAPRRPRREFNDRDDRRGDRRDRNSNGNGFDRAERGERGG
RRERRDVGDMEMYRIEVGRDDGVEVRHIVGAIANEADISSRYIGNIKLFGTHSTIELPKG
MPSEVLTHLSRARVLNKPMQMQLIGDAQPFERRGGGERRGGPRREGGSEGGFGAGRRNDR
GGERRSNGGGERRGGGNRGNAAPRQDGTNAVPRRRSSSHNA
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagaccgatatttcttttgctgatttaggtttatcagcatctattttgaca
gcactgaacgacctgggatacgaaaaaccatcaccaatccagcaacaatgtattccattg
ttaatggatggtaacgatgtattaggtatggcacaaaccggtagtggtaaaaccgctgca
tttagtttgccattactgcaaaacattgacccagatttaaaagctccgcaaattttagtt
ctggcaccaactcgtgagttggctgttcaggtagctgaagcgatgagcgatttctctaaa
catatgagccgcgttaacgtcgttgctctatacggtggacaacgttatgacgtgcaattg
cgcgcgttacgccaaggtccacaaatcgttgtgggtacacctggccgtcttcttgaccat
ctgaagcgtggtactttagatctttctaaattaaaaggcttagtcttagacgaagctgat
gaaatgctacgaatgggctttattgaagatgttgaaaacatcatgggccaaattccagca
gagcaccaaaccgcattgttctctgcgacaatgcctgagccaattcgccgtattacgcgt
cgctttatgaaagaacctaaagagattcgtattcaggcaagcattaccacacgtcctgac
attgctcaaagctactggactgtttacggtatgcgtaaaaatgaagcgttggttcgtttc
ttagaagcagaagattttgatgcggcgattattttcgtccgtactaaaaatgcaacatta
gaagtcgcagaagcattagagcgtaacggctataacagcgcagcgctgaatggtgacatg
aaccaagctctgcgtgagcagacattagagcgcctgaaagatggtcgtttagatatcttg
attgcgactgacgtggcagctcgtggtttagacgttgagcgtattagcttagtcgttaac
tatgatatccctatggatgctgagtcttatgttcaccgtattggtcgtactggccgtgca
ggtcgtgcgggccgtgccttactgttcgttgagaaccgtgagcgtcgcctgttacgtaac
gttgaacgtacgatgaaactgactattcctgaagttgaactgccaaatgcagatttgtta
agtcaacgtcgtcaggaaaaatttgctgaaaaaatccagcaacaattagaaagcagcgat
ttagaccaatatcgttcactgttagcgaaaatgtctccatcagaagatgttgatatggaa
actctagcagcagcgttactgaaaatggctcaaggcgaacgcgccctgatcctaccacca
gatgcacctcgtcgtccgcgtcgtgaattcaacgaccgtgatgatcgccgtggtgaccgt
cgtgaccgcaatagcaatggtaatggttttgaccgtgcagagcgtggggagcgtggcggt
cgtcgtgagcgccgtgatgttggcgatatggaaatgtatcgtatcgaagttggtcgcgat
gacggtgtggaagttcgtcatattgttggtgcgattgctaacgaagcggacatcagtagc
cgttatattggtaatatcaaactgtttggtactcactcaaccatcgagttaccaaaaggt
atgccaagcgaagtgttaactcacttaagccgtgcacgtgtattaaataaaccaatgcaa
atgcaactgattggtgatgcacaaccgtttgagcgtcgtggcggtggtgagcgtcgtggt
ggtcctcgtcgtgaaggtggtagcgagggaggtttcggtgcaggtcgtcgcaatgaccgt
ggtggtgagcgtcgtagcaacggtggtggtgaacgccgtggcggtggtaaccgtggcaat
gcagcacctcgccaagatggcactaatgcggtacctcgtcgtcgtagcagcagccataac
gcgtaa
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