Pseudomonas rhizosphaerae: LT40_00640
Help
Entry
LT40_00640 CDS
T03339
Symbol
rimO
Name
(GenBank) ribosomal protein S12 methylthiotransferase
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
prh
Pseudomonas rhizosphaerae
Brite
KEGG Orthology (KO) [BR:
prh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
prh03009
]
LT40_00640 (rimO)
Enzymes [BR:
prh01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
LT40_00640 (rimO)
Ribosome biogenesis [BR:
prh03009
]
Prokaryotic type
ribosomal protein modification factors
LT40_00640 (rimO)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
TRAM_2
UPF0004
YajR_YAM
CLP1_P
Matrix_Paramyxo_N
Motif
Other DBs
NCBI-ProteinID:
AIS15992
UniProt:
A0A089YNT1
LinkDB
All DBs
Position
complement(132819..134156)
Genome browser
AA seq
445 aa
AA seq
DB search
MSTTPSSAAPKVGFVSLGCPKALVDSERILTQLRMEGYQVVPTYEDADVVVVNTCGFIDT
AKAESLEVIGEALKENGKVIVTGCMGVEENAIRKVHPSVLSVTGPQQYEQVVNAVHQVVP
PRHDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSE
AERLVKAGVKEVLVISQDTSAYGVDVKYKTDFWNGRPVKTRMLELCEALSSLGVWVRLHY
VYPYPNVDDIIPLMAAGKILPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKKWREQCPD
LIIRSTFIVGFPGETEEDFQYLLDWLSEAQLDRVGCFQYSPVEGAPANLLDAAIVPDDVK
QDRWDRFMAHQQAISAARLQMRIGKRVEVLIDEVEEQGAVGRCFFDAPEIDGNVFIDDAT
HLKPGDKVWCTIVDADEYDLWAELA
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccactccttcgtcggccgctccaaaggtcggcttcgtctcgctgggttgcccc
aaggccctggtcgactccgagcgcatcctgactcagttgcgcatggaaggttaccaagtg
gtaccgacctacgaagacgccgacgtcgtggtggtcaacacctgtggcttcatcgacacc
gccaaggcggagtcgctggaagtgatcggcgaagcgctcaaggagaacggcaaggtcatc
gtcaccggttgcatgggcgtcgaagaaaatgccattcgcaaggtgcaccccagcgtgctg
tcggtcaccggcccccagcaatacgagcaggtggtcaacgcggtgcaccaggtggtgcca
cctcgacacgatcacaacccgctgatcgacctggtgccgccccagggcatcaagctgacg
ccgcgccattacgcctacctgaagatttccgaaggctgcaaccacagttgcagcttctgc
atcatcccctcgatgcgcggcaagctggtcagccgcccggtgggcgatgtgctgagcgag
gccgagcgcctggtcaaggccggggtaaaggaagtgctggtgatttcccaggacaccagc
gcctatggcgtagacgtcaagtacaagactgatttctggaacggtcgcccggtcaagacg
cgcatgctcgaactgtgcgaagccctgagcagcctgggtgtctgggtccgcctgcactac
gtgtacccctaccccaacgtcgacgacatcattccactgatggccgccggcaagatcctg
ccgtacttggacattccattccagcacgctagcccgaaagtgctcaaggcgatgaagcgc
ccggccttcgaagacaagaccctggcgcgcatcaagaagtggcgcgagcagtgcccggac
ctgatcatccgctcgaccttcatcgtcggcttccccggcgaaaccgaagaagacttccag
tacctgctggactggctgagcgaagcgcagctggaccgcgtcggctgcttccagtattcg
ccggtcgagggcgcaccggccaacctgctggacgccgccatcgttccggatgacgtgaag
caggaccgctgggatcgcttcatggcgcaccagcaggcaatcagcgccgcacgtctgcag
atgcgcatcggcaagcgtgtggaagtgttgatcgatgaagtggaagaacaaggcgcggtt
ggccgctgcttcttcgatgctccggaaatcgacggcaacgtgttcatcgacgatgccacc
cacctcaagccgggcgacaaggtctggtgcaccatcgtcgacgccgacgaatacgatttg
tgggccgaactggcctga
DBGET
integrated database retrieval system
