Pseudomonas rhizosphaerae: LT40_00895
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Entry
LT40_00895 CDS
T03339
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
prh
Pseudomonas rhizosphaerae
Brite
KEGG Orthology (KO) [BR:
prh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prh03021
]
LT40_00895
Transcription machinery [BR:
prh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
LT40_00895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIS16039
UniProt:
A0A089YKD1
LinkDB
All DBs
Position
complement(183644..186490)
Genome browser
AA seq
948 aa
AA seq
DB search
MAQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGETRQYALRNAPLTRVRFSPG
DVITHFEGWKLTVREVDDADGLLVYHGLNAQNEPRTLPETQLSNFIQFRLASDRLFAGQI
DPLPWFSLRYNTLEHTSKQLQSSLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVG
LGKTIEAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDAERFIESDA
SNPFEDAQLALVSLEWLTEDEKAQDALFAAGWDLLVVDEAHHLVWHEEKASPQYSLVEQL
AEVIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESENYRPVAEAVQELLDK
GRLSTTAQQTIHGLLGADGDTLVAAVNAGDEEAGPRLIRELLDRHGTGRVLFRNTRAAVQ
GFPERKLHPYPLPCPDQYLELPLGEHADLYPEVSFQAQAEDGETERWWRFDPRVEWLIDT
LKMLKRTKVLVICAHAETAMDLEDALRVRSGTLATVFHEGMSILERDRAAAYFADEEFGA
QVLICSEIGSEGRNFQFAHHLVLFDLPAHPDLLEQRIGRLDRIGQKHIIELHVPYLENSP
QERLFQWYHSALNAFLNTCPTGNALQHAFGPRLLPMLENADDGEWQGLIDEARSRREALE
SELHTGRDRLLELNSGGDGEGQALVAAIEEQDDQFALPIYMETLFDAFGIDSEDHSDNAL
ILRPSEKMLDASFPLGDDEGVTITYDREQALSREDMQFITWEHPMVQGGMDLVLAGSMGN
TAVALIKNKALKPGTVLLELLYVSEVVAPRSLQLGRYLPPAALRCLLDTNGNDLSSRVSF
ETLNDQLESVPKASANKFIQAQRDVLAPRITAGESKIAPRHAERVAQAQHRLAAETDEEL
ARLTALQAVNPTVRDSELVALRKQREEGLAMLDKAALRLEAIRVLVAG
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcagtatcaaccggggcaacgctggatcagcgacagcgaagcggaactcggc
ctgggcaccgtcctggctcaggacggtcgcttgctcaccgtgctctacccggccaccggc
gaaacccgccagtacgcattgcgcaatgccccattgacgcgcgtgcgcttctctccgggc
gatgtgatcacccatttcgaaggctggaaactgaccgtacgcgaagtcgacgacgccgac
ggcctgctggtctaccacggcctcaatgcgcagaacgagcctcgtacgctgcctgaaacc
cagctgtccaacttcatccagttccgtctggccagtgaccgcctgttcgccggccagatc
gacccgctgccgtggttctcgctgcgctacaacacccttgagcacaccagcaagcagttg
cagtcctcgctatggggcctgggtggcgtgcgtgcgcaacccatcgcgcaccagctgcac
atcgcccgcgaagtggccgaccgcatcgcgccccgggtattactggccgacgaagtaggc
ctgggcaagaccatcgaggccggcctggtcattcaccgccaactgctgtccgggcgcgcc
agccgcgtactgatcctggtcccggagaacctccagcaccaatggctggtggagatgcgc
cggcgcttcaacctgcaggtggcactgttcgatgccgagcgcttcatcgagagtgatgcc
agcaaccccttcgaggacgcgcaactggcgctggtttcgctggaatggctgaccgaagac
gagaaggcccaggacgcgctgttcgccgccggctgggacctgctggtcgtcgacgaggcg
catcacctggtctggcacgaagaaaaggccagcccgcagtactccctggtcgagcagctg
gccgaggtcattcccggcgtcctgctgctcactgcgacccctgagcaactgggccaggac
agccacttcgcgcgcctgcgcctgctcgatccgaaccgcttccacgacttggcggccttc
cgcgccgaaagcgagaactaccgcccggtcgccgaagcggtgcaggagctgctggacaaa
ggccgcttgtcgaccactgcgcaacagaccattcatggcctgctcggcgccgatggcgat
accctggtcgcggcggtcaacgccggcgacgaggaagccggcccgcgtctgatccgcgaa
ctgctcgaccgtcacggcaccgggcgcgtactgttccgcaacacccgcgccgccgtgcaa
ggcttccccgaacgcaagctgcacccttaccctctgccatgccccgatcagtacctcgag
ttgcccctgggcgagcacgccgatttgtacccggaagtcagcttccaggcccaggccgaa
gacggtgaaaccgagcgctggtggcgcttcgatccgcgcgttgaatggctgatcgacacc
ctcaagatgctcaagcgcaccaaggtgctggtcatctgcgcccacgccgaaaccgcgatg
gacctcgaggacgccctgcgcgtgcgctccggtaccctggccacggtgttccacgaaggc
atgagcatcctggagcgcgaccgcgcggcggcgtacttcgccgacgaggaatttggcgcc
caggtgttgatctgttcggaaatcggcagcgaggggcgcaacttccagttcgcccaccac
ctggtgctgttcgacctgcctgcgcaccccgacctgctggagcagcgcatcggccgtctc
gaccggatcggccagaagcacattatcgaactgcacgtgccgtacctggaaaacagtccg
caggagcgtctgttccagtggtaccacagcgcgctcaacgcctttctgaacacctgccct
accggcaatgcgctgcagcatgcgttcggcccgcgcctgctgcccatgctggaaaatgcc
gacgacggcgaatggcaaggcttgatcgacgaagcgcgcagccgccgcgaggcgctggaa
agcgagctgcacaccgggcgcgaccgactgctggagctcaactccggcggcgatggcgag
ggccaggccctggtggccgcgatcgaagagcaggacgatcaattcgccctgcccatctat
atggaaaccctcttcgatgcctttggtatcgacagcgaggatcactccgacaatgccctc
atcctgcgtcccagcgaaaagatgctggatgccagcttccccctgggcgacgacgaaggc
gtgaccattacctacgaccgcgagcaggcattgtcgcgcgaggacatgcagttcatcacc
tgggagcatcccatggtgcagggcggcatggacctggttctggcgggctccatgggcaat
accgccgtggcgctgatcaagaacaaggcgctcaagcctgggaccgtgctgctggaattg
ctctacgtgagcgaagtcgtggcacctcgctcgctgcagctggggcgttacctgccgcct
gccgcgctgcgctgcctgctcgacaccaacggcaacgacctgtcctcgcgggtgtcgttc
gaaaccctcaacgaccagctcgaaagcgtacccaaggccagcgccaacaagttcatccag
gcccagcgcgacgtgctggcaccgcgcatcactgccggtgaaagcaagatcgcgccacgc
catgccgaacgcgtggcacaggcgcaacatcgcctggccgccgagacggatgaagaactg
gcacgcctgaccgccctgcaggcggtcaatccaaccgtgcgtgacagtgaactggtcgcc
ctgcgcaagcagcgcgaggaaggcctggccatgctcgacaaggccgccctgcgccttgag
gcgattcgggtcctggtggccggctga
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integrated database retrieval system
