Pseudomonas rhizosphaerae: LT40_03630
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Entry
LT40_03630 CDS
T03339
Name
(GenBank) exodeoxyribonuclease
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
prh
Pseudomonas rhizosphaerae
Pathway
prh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
prh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LT40_03630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prh03400
]
LT40_03630
Enzymes [BR:
prh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
LT40_03630
DNA repair and recombination proteins [BR:
prh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
LT40_03630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
DUF2064
DUF4807
Motif
Other DBs
NCBI-ProteinID:
AIS16541
UniProt:
A0A089ZPV5
LinkDB
All DBs
Position
complement(784940..786319)
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AA seq
459 aa
AA seq
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MIKDPFARLNLDREVITVSQLNGRARVLLEDVFSNIWVEGEISNLARPASGHVYFTLKDS
GAQVRCALFRQNAQRVRQVLKDGAAVKVRGKVSLFEGRGDYQLILDTVEPAGDGALRMAF
DALKEKLDAEGLFSSERKVALPAHPQRIGIVSSPTGAVIRDIISVFRRRAPQIQLTLIPT
AVQGREATAQIVRALRLADARGFDAIILARGGGSLEDLWCFNEESVARAVDACVTPIVSA
VGHETDVSISDFVADVRAPTPSAAAELLAPDAGDLQRRLDSLQRRLVLRMHNRLAHERLR
VEGLTRRLRHPGERLRQQAQRLDDLDMRMRRAFERQMTARAHRLAQLQTRLAGQHPDRVL
RLLKQRLDGLAERLPRAMRDTLKDRRQQLQAQVQTLHVVSPLATLGRGYSILLDEQGQAI
RSAEQTRRGQRLIARLGEGELEVRVEDNHLTPVTLSLLD
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaagaccccttcgcccgcctcaacctcgatcgcgaggtcatcaccgtcagccag
ctcaatggccgcgcccgtgtattgctcgaagacgtcttcagcaacatctgggtcgaaggt
gaaatctccaacctggcgcgtccggcgtccggccacgtctatttcaccctcaaggacagc
ggcgcccaggtgcgctgtgccttgttccggcagaacgcgcaacgcgtgcgccaggtgctc
aaggatggcgcagcggtgaaagtgcgcggcaaggtctcgctgttcgaaggccgtggcgac
tatcaactgatcctcgacaccgtggagcctgccggcgacggcgcgctgcgcatggcgttc
gacgcgctcaaggaaaagctcgacgccgaaggcctgttcagcagcgagcgcaaggtggcg
ctgccggcccacccgcaacgcatcggtatcgtcagctcgccgaccggcgcggtgatccgc
gacatcatcagcgtgttccgtcgacgtgccccacagattcagctgaccttgatccccact
gccgtgcagggccgcgaagccaccgcacagatcgtccgcgccctgcgcctggccgatgcg
cgcggcttcgatgcgatcatcctggcccgtggcggcggctcgctggaggacctctggtgc
ttcaacgaggaatccgtagcgcgcgccgtggatgcctgcgtgacgcccatcgtcagcgcc
gtgggccatgaaaccgacgtgtccatcagcgacttcgtcgccgacgtgcgcgccccgaca
ccttcggcggccgccgagctgctggccccggatgccggcgacctgcaacggcgactcgac
agcctgcaacgccgcctggtactgcgcatgcacaaccgtctggcccacgagcgcctgcgc
gttgaggggctgacccgacgcctgcgccaccccggcgagcgcctgcgccagcaggcacaa
cgcctggatgatctggacatgcgcatgcgccgcgccttcgagcggcagatgactgcgcgt
gcacatcgcctggcgcagttgcagacacgcctggccgggcagcacccggaccgtgtcctg
cgcctgctcaagcaacgcctggacggccttgccgagcgcttgccgcgggccatgcgcgac
acgctgaaggaccggcgccagcagttgcaggcccaggtgcagaccctgcacgtggtcagc
ccgctggcgaccttgggccgtggctacagcatcctgctcgacgagcagggccaggcgatc
cgcagcgccgagcaaacccggcgcggtcaacgcctgatcgccagattgggcgaaggcgaa
ctcgaagtgcgcgtggaagacaatcacctcacgcccgttaccctttccctactggactga
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