Pseudomonas rhizosphaerae: LT40_05320
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Entry
LT40_05320 CDS
T03339
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
prh
Pseudomonas rhizosphaerae
Pathway
prh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LT40_05320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prh03400
]
LT40_05320
DNA repair and recombination proteins [BR:
prh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LT40_05320
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LT40_05320
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_22
AAA_30
HAMP
Cauli_AT
Motif
Other DBs
NCBI-ProteinID:
AIS16862
UniProt:
A0A089YR61
LinkDB
All DBs
Position
1159398..1161413
Genome browser
AA seq
671 aa
AA seq
DB search
MSEFQLVTRFEPAGDQPEAIRLMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQVQRPTL
VLAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDSSINDHIEQ
MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQY
TRNEMDFARATFRVRGDVIDIFPAESDLEAIRIELFDDEVENIAAFDPLTGEVTRKLPRF
TFYPKSHYVTPRETLLGAVEGIKEELKDRLDYFRDKNKLVEAQRLEQRTRFDLEMILELG
YCNGIENYSRYLSGRPSGAAPPTLYDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL
VEYGFRLPSALDNRPMRFDEWEGVSPQTIFVSATPGNYEAEHAGRIIEQVVRPTGLVDPQ
VEVRPALTQVDDLLSEIRKRVATDDRILVTVLTKRMAEDLTDYLADHDVRVRYLHSDIDT
VERVEIIRDLRLGAFDVIVGINLLREGLDMPEVSLVAILDADKEGFLRSDRSLIQTIGRA
ARNLNGRAILYADRMTGSMERAIGETERRREKQIAFNEAHGIVPKGVVKDVADIMEGATV
PGSRSKKRKGMAKAAEENARYENELRSPSEITKRIKQLEEKMYQLARDLEFEAAAQMRDE
IGKLRERLLKV
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagtttcaactggttacccgattcgagccggccggcgaccagccggaagccatt
cgcctgatggtggagggtatcgaggcgggcctggcgcaccagaccttgctgggggtaacc
gggtcgggcaagacgttcagcatcgccaacgtgattgcccaggtccagcgtcccacactg
gtgctggcgccgaacaagaccttggcggctcagctgtatggcgagttcaaggcgttcttc
ccgaacaacgcggtcgaatatttcgtctcctactacgactactaccagcccgaagcgtac
gtgccgtcgtcggacaccttcatcgagaaggattcctcgatcaacgaccacatcgagcag
atgcgcttgtccgcgaccaaggcgttgctcgagcgcaaggacgccatcatcgtcaccacc
gtgtcgtgcatctacggtctgggcagccctgaaacctatctgaaaatggtcctgcacgtg
gatcgcggcgacaagctcgaccagcgcgcgctgctgcgccggctcgccgacctgcaatac
acccgcaacgagatggactttgcccgcgccacattccgcgtacgcggcgacgtcatcgat
atatttcctgccgaatccgatctggaagccatccgtatcgaattgttcgacgacgaggtc
gagaacattgctgccttcgatccactgaccggtgaagtcacgcgcaagcttccgcgcttt
accttctaccccaagagtcactacgtgaccccgcgcgagacgttgctgggcgcggtagaa
ggtatcaaggaagaactcaaggatcgtctggattacttccgcgacaagaacaagctggtc
gaagcccagcggctggagcaacgtacgcgcttcgatctggagatgatcctggagctgggc
tattgcaacggcatcgaaaactattcgcgctacctgtccgggcgtccgtccggcgcggca
ccacccacgctctatgactacctgccggccgacgccttgctggtgatcgacgagtcccac
gtcagcgttccccaagtgggcgcgatgtacaagggcgaccgctcgcgcaaggagaccctg
gtcgagtacggcttccgcctgccctcggcgctggacaaccgacccatgcgtttcgacgaa
tgggaaggggtgagcccgcagaccattttcgtctcggccacgcccggcaattacgaggct
gaacacgccgggcgcatcatcgagcaggtggtacggcccaccggcctggtcgatcctcag
gtggaagtgcggcccgcgttgacccaggtggacgatctgttgtcggagatccgcaagcgc
gtcgccaccgacgatcgcatcctggtcaccgtgctgaccaagcgcatggccgaggacctg
accgactacttggccgaccacgatgtacgcgtgcgttacctgcactcggacatcgatacc
gtcgagcgtgtcgagatcattcgcgacctgcgcctcggcgcgttcgatgtgatcgtaggg
atcaacttgctgcgcgaaggcctggacatgcccgaggtgtcgctggtggccattctggat
gccgacaaggaaggtttcctgcgctccgatcgctcattgatccagaccatcggccgcgcc
gcgcgaaacctcaatggccgcgccatcctttacgccgatcgcatgaccggctcgatggag
cgcgccatcggcgagaccgagcgtcgtcgcgaaaagcagatcgccttcaacgaagcccac
ggcatcgtgcccaagggcgtggtcaaggacgtcgccgatatcatggaaggcgccaccgtg
cccggctcgcgcagcaagaagcgcaagggcatggccaaagccgccgaggaaaatgcgcgc
tacgagaacgagctgcgctcgccgagtgagatcaccaagcgcatcaagcagttggaagag
aaaatgtaccagttggcccgcgacctggaattcgaagccgccgcgcagatgcgcgacgaa
atcggcaagctgcgcgaacgcctgctcaaggtctga
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