Pseudomonas rhizosphaerae: LT40_05800
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Entry
LT40_05800 CDS
T03339
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
prh
Pseudomonas rhizosphaerae
Pathway
prh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LT40_05800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prh03019
]
LT40_05800
03400 DNA repair and recombination proteins [BR:
prh03400
]
LT40_05800
Enzymes [BR:
prh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LT40_05800
Messenger RNA biogenesis [BR:
prh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LT40_05800
DNA repair and recombination proteins [BR:
prh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LT40_05800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
ResIII
Sigma70_r4_2
HTH_23
VBS
Motif
Other DBs
NCBI-ProteinID:
AIS16947
UniProt:
A0A089YRF4
LinkDB
All DBs
Position
1262235..1264376
Genome browser
AA seq
713 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVARGGDALVLMPTGGGKSLCFQVPALLRDGLA
VVVSPLIALMDDQVATLEELGVAAAALNSTLSSDEQRELAARIRRGEIKMLYLAPERLVQ
PRMLDFLRGLDIALFAIDEAHCVSQWGHDFRPEYLQLGQLAEQFPQVPRIALTATADKRT
REEIVTRLHLQDAERFLSSFDRPNIFYRIVPKESPRKQLLAFLAERRSDAGIVYCLSRKK
VDEVAAFLCENNFPALPYHAGLPAATRAANQKRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHMDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVLMLKQMLQSSEGDERHKRLEHHK
LDAMLALCEETRCRRQALLAYFDEDMPQPCGHCDNCVDGVQTWDATEPARQALSAIYRTG
QRYGVGHLVDVLLGKDTEKVRSFGHDKLAVFGVGKGRSEGEWRSLYRQVVARGLADIDLE
GYGGLRLSDTCRPLLRGEVMLELRKELKPQTSSTRGSGSASPASQLVRDEEREQWEALRT
LRRNLAQEHAVPPYVIFPDSTLLEMLRSQPTSMAEMGRVSGVGARKLERYGEAFLQVLAG
AGGAEAPREVADIRHELISLARAGMTPLQIAGQLQCSEKNVYSLLAEAIAQQQLSLEQAL
DLPEELMSEIQDAFLDGEGELPAVAEIAGQFAGRVPEGVLYCVRAALQSEFEV
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcaacgcgttcttaaagacatcttcggctacgacagcttccgcggt
cgccagggtgccattatcgagcgtgtggcccgcggtggcgatgccttggtattgatgccc
accggcggcggcaaatcgctgtgcttccaagtgccggccctgctgcgcgacggcctggcc
gtggtggtgtcgccactgatcgccctgatggacgaccaggtcgccaccctcgaagaactt
ggcgtggcggcagcggcgctcaactccacgctcagttccgatgaacagcgcgagctggcc
gcgcgcatccgccgcggcgaaatcaagatgctctacctggcgcccgagcgcctggtgcag
ccgcgcatgctggatttcctgcgcgggctggacatcgccctgttcgccatcgacgaggct
cactgcgtttcgcaatgggggcatgatttccgtcccgagtacttgcagctaggccagttg
gccgagcagtttccccaagttccgcggatcgccctgactgccaccgccgacaagcgcacg
cgcgaggaaatcgtcacccgtctgcacttgcaggacgccgaacgcttcctgtccagtttc
gaccgacccaacatcttctaccgcatcgtgcccaaggaaagtccgcgcaagcagctgctg
gcgttcctcgccgagcggcgcagcgatgccggcatcgtctattgcctgtcgcgcaagaaa
gtcgacgaggtcgccgccttcctctgcgaaaacaacttcccggcgttgccgtaccacgct
ggcctgcccgcggcgacgcgggcggcgaaccagaagcgcttcctcaacgaggaaggtttg
atcatggttgccaccatcgccttcggcatgggcatcgacaagcccaacgtgcgcttcgtg
gcgcacatggacctgcccaagtcgctggaagcctactaccaggaaaccggccgcgccggc
cgcgatggcctgccggcggatgcatggatggcctacgggctgcaagacgtgctgatgctc
aagcagatgctgcagagttccgaaggcgacgagcgccataaacgccttgagcaccacaag
ctcgatgccatgctggccctgtgcgaagaaacccgctgccgtcgccaggcgctgctggcc
tatttcgacgaagacatgccgcaaccctgtggccactgcgacaactgtgtcgacggcgtg
cagacctgggatgccaccgaaccggcgcgccaggcgctgtcggcgatctaccgcaccggc
cagcgttatggcgtcggccatctggtggacgtgctgttgggcaaggacaccgaaaaggtg
cgcagctttggccatgacaaactggccgtgttcggcgtcggcaagggccgttcggaaggg
gagtggcgttcgctgtatcgccaggtggtggcgcgcgggctggcggacatcgacctggaa
ggctacggcggtctgcgcctgagtgacacttgccggccgctgctgcgtggcgaggttatg
ctcgaactgcgcaaggagctcaagccgcagacgtcctccacccgtggcagcggctcggcc
agcccggccagccagctggtgcgcgacgaagagcgcgaacaatgggaagcgctgcgtacg
ctgcggcgcaacctggcccaggaacatgcggtaccgccctacgtcattttccccgactcg
acgttgctcgaaatgctgcgcagccagcccaccagcatggctgagatgggtcgggtcagc
ggcgtgggcgcgcgcaagctcgagcgctacggcgaagcgtttttgcaggtcctggcaggt
gcgggcggcgcagaagcgccacgcgaggtggcggatattcgccacgagctgatcagtttg
gcgcgcgctggcatgaccccgctgcagatcgccggccagttacagtgcagtgagaagaat
gtctacagcctgctcgccgaagcgatcgcgcaacaacagctgtcgttggaacaggcgctc
gaccttcccgaagaattgatgagcgagatccaggacgcatttctcgacggcgaaggcgag
ttgcctgccgtcgccgagattgctgggcaatttgccggtcgggtgcccgagggcgtgctg
tattgcgtacgcgcggcgttgcagtctgaattcgaagtgtga
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