Pseudomonas rhizosphaerae: LT40_07485
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Entry
LT40_07485 CDS
T03339
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
prh
Pseudomonas rhizosphaerae
Pathway
prh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LT40_07485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prh03400
]
LT40_07485
Enzymes [BR:
prh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LT40_07485
DNA repair and recombination proteins [BR:
prh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LT40_07485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIS17253
UniProt:
A0A089YLH1
LinkDB
All DBs
Position
complement(1636137..1639586)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPQLPASAGKHAWGNLPGAALSLAIAEAANAAKRFTLLLTADSQSADRLEQELRF
FAPQLPVLHFPDWETLPYDLFSPHQDIISQRIAALYRLPELAHGVLVVPITTALHRLAPT
QFLLGSSLVLDVGQRLDVEQMRTRLEASGYRYVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPETQRSIDKVESIRLLPAREFPLQKEAVTRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFEETSTLFDYLPQDTQVFSLPGIEQAAEHFWSDVRN
RYEERRVDPARPLLPPAELFMPVEDCFAQLKTWPRIVVSQDDLESGPGRERFAAAKLPDL
AIEAKASQPLAALAGFLDQFPGRVLFTAESAGRREVLLELLERLKVRPRTVDGWEEFAQG
KERLAITIAPLDEGLQILDPALALIAESPLFGQRVMQRRRRDKRADAANDNVIKNLTELR
EGAPVVHIDHGVGRYLGLATLEIDNQVAEFLTLEYAENAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPALDYATFSAGFA
FEETPDQQSAIEAVRHDMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVGAAVEQLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEALKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIAT
PPARRLSVRTFVMEQNKGTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASAVDEDGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGITKV
DGGPQGGRIEFGASTPVDPLTLIKLIQSQPKRYKFEGATLFKFMVPMERAEERFNVIEAL
FERLTPKAG
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgttctgcgccttccgcaactccctgcctcggcaggcaaacacgcctggggcaac
ctgcccggggctgccttgagcctggcgatcgccgaagcggccaatgccgccaagcgcttc
accctgctgctcactgccgacagccaaagcgccgatcggctggaacaggaactgcgcttt
ttcgccccgcagttgccggtgctgcatttccccgactgggaaaccctgccgtacgacctg
ttctcgccgcaccaggacatcatctcccagcgtatcgccgccctctatcgcctgcccgag
ctggcgcacggggttttggtagtgcccatcaccacagccctacatcggctggcgccgacc
cagttcctgctgggcagcagcctggtgctggacgtcggccagcgcctggatgtggagcag
atgcgcacgcgcctggaagccagcggctaccgctatgtcgacacggtgtacgagcacggc
gaatttgccgtgcgcggcgccctgatcgacctgttccccatgggcagcaaactgccctac
cggatcgacttgttcgacgacgagatcgagacgctgcgcaccttcgatccggagacccag
cgctccatcgacaaagtcgagtcgatccgcctgctgccggcccgcgagttccccctgcag
aaggaagcggtgacccgcttcaaggcacgctttcgcgagcgtttcgacgtcgatttccgc
cgctgcccgatctttcaggacctgagcagtggcattacccctgccggtatcgagtactac
ctgccgctgttcttcgaagaaacctcgaccctgttcgactacctgccccaggacacccag
gtgttctcgctgcccggcatcgagcaggcggccgagcacttctggagcgacgtgcgcaac
cgctacgaagagcgccgggtcgatcctgcgcggccactgctgccgcccgccgagctgttc
atgccggtagaagactgcttcgcccaactcaagacctggccacgcatcgtcgtcagccag
gacgacctggagtcggggccgggccgcgaacgcttcgctgcggcgaaactgccagacctg
gccatcgaggccaaggccagccagcccctcgccgcgctcgccggattcctcgaccagttc
cccgggcgggtattgttcaccgctgaatccgccggccgccgcgaagtgctgctggagttg
ctggagcgcctcaaggtacgcccaagaacggttgacggttgggaagaattcgcccagggc
aaggaacgcctggcaatcaccatcgcgccgctggacgaagggctgcagattctcgacccg
gccctggccctgatcgccgaaagcccgctgtttggccagcgcgtgatgcagcggcgccgc
cgcgacaagcgcgccgacgcggccaacgacaacgtcatcaagaacctcaccgagctgcgc
gaaggcgcgccggtggtgcacatcgaccatggcgtgggccgttatctggggctggcgacg
ctggagatcgacaaccaggtcgctgaattcctcaccctggaatacgccgagaacgccaag
ctctatgtgccggtggccaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctggcgccgctgcaccggctcggctccgaggcctggcagaaagccaagcgcaaggccgcc
gagcaggtgcgcgacgtggctgccgagttgctcgacatctatgcccgccgcgccgcgcgc
gaaggctatgcgttcgccgacccggccctggactacgccacgttcagcgccggcttcgct
ttcgaggaaaccccggaccagcagtcggccatcgaagcggtgcgccacgacatgctggcg
cccaagccgatggaccgcctggtgtgcggcgacgtcggcttcggcaagaccgaagtggcc
atgcgcgcggcgttcatcgccgtgcacggcggccgccaggtggccatcctggtgccgacc
accctgctcgcccagcagcactacaacagcttccgcgaccgtttcgccgattggccggta
acggtcgaagtgatgagccgcttcaagtcggccaaggaagtcggtgccgccgtcgagcaa
ctggccgaaggcaagatcgacatcgtcatcggtacccacaagctgctgcaggacgacgtc
aagatcaagaacctgggcctggtgatcatcgacgaagaacaccgcttcggggtgcgccag
aaagaggccctcaaggccctgcgcagcgaagtcgatatcctgaccctgaccgccacgccg
atcccgcgcacactgaacatggccgtggccggcatgcgcgacctgtcgatcatcgccacg
ccaccggcacggcgcctgtcggtgcgcaccttcgtcatggagcagaacaagggcaccgtg
aaggaagcgctgctgcgcgaactgctgcgcggcggacaggtgtactacctgcacaacgat
gtgaagaccatcgagaaatgcgccgccgacctcgccgaactggttcccgaggcgcgcatc
ggcatcggccacgggcagatgcgcgagcgcgacctggaacaggtgatgagcgatttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgaaaccggtatcgacgtgccc
agcgccaacaccatcatcatcgagcgggccgacaagttcggcctggcccagctgcatcag
ctgcgcggccgcgtcgggcgcagccaccaccaggcgtacgcctacctgctgaccccgccg
cgccagcagatcacgccggacgcggaaaagcgcctggaagcgatcgccaatacccaggat
ctgggcgcaggtttcgtcctggccaccaatgacctggaaatccgcggcgcaggcgagttg
ctcggcgaaggccagagcgggcagatccaggcggtcggctttaccctctacatggaaatg
ctcgaacgtgcggtcaagtcgatccgcaagggcgagcagcctaacctggaccagcccctg
ggtggcggcccggaaatcaacctgcgcctgccggcgctgattcccgaggattacctgccc
gacgtgcacgcgcgcctgatcctctacaagcgcatcgcctcggcggtggacgaagatggt
ctcaaggacctgcaggtggaaatgatcgaccgcttcggcctgctgcccgagccgaccaag
aacctggtgcgcctgaccctgctcaagcttcaggccgagcagttggggatcaccaaggtc
gacggcggcccgcaaggtgggcggatcgaattcggcgccagtacgccggtcgatccactg
accctgatcaagctgatccagagccagcccaagcgctacaagttcgaaggcgccacgctg
ttcaagttcatggtgccgatggagcgcgccgaggagcgcttcaacgtcatcgaagcgctg
ttcgagcgcctgacgccaaaagccggttga
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