Pseudomonas rhizosphaerae: LT40_13115
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Entry
LT40_13115 CDS
T03339
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
prh
Pseudomonas rhizosphaerae
Pathway
prh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LT40_13115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prh03019
]
LT40_13115
03016 Transfer RNA biogenesis [BR:
prh03016
]
LT40_13115
Enzymes [BR:
prh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LT40_13115
Messenger RNA biogenesis [BR:
prh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LT40_13115
Transfer RNA biogenesis [BR:
prh03016
]
Prokaryotic type
tRNA degradation factors
LT40_13115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_2
KH_PNO1_2nd
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
AIS18271
UniProt:
A0A089ZQV1
LinkDB
All DBs
Position
complement(2893743..2895848)
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AA seq
701 aa
AA seq
DB search
MNPVIKTFQFGQSTVTLETGRIARQASGAVLVTVDNDVTVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQQQASSLDMVV
AGTKDAVLMVESEAKELTEDQMLGAVLFAHDEFQSVIKAVGELAAEAAKPTWSWTPKAWN
TELIGAIRGEFGDAVSQAYTITVKAERYAKLGELRDQVIAKFSGEEGQPTAAEVKEIFGE
IEYRTVRENIVNGKPRIDGRDTKTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAILT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKINGITEEIMEIALGQALEARLNILGQMNQ
VIGTSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ESKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaagacgtttcaattcggtcaatcgaccgtaaccctcgaaacgggc
cgcattgcccgtcaagcctccggcgccgtgctggtcaccgtcgacaacgacgtgaccgtg
ctggtcaccgtggtaggtgccaagcaagccgatccaggcaagggctttttcccgctgtcc
gtgcactaccaggaaaagacctacgctgccggcaagattcccggtggtttcttcaagcgt
gaaggccgtccttccgagaaagaaaccctgacctcgcgtttgatcgatcgcccgatccgc
ccgctgttccccgaaggcttcatgaacgaagtgcaggttgtctgcaccgttgtctccacc
agcaagaagaccgatccggacatcgctgccatgatcggtacctcggcagccctggccatc
tccggcatcccgttcgacggcccgattggcgccgcgcgcgtggccttccacgagagcact
ggctacctgctgaacccgacctacgagcagcagcaggcttccagcctggacatggtcgtg
gccggtaccaaagacgccgtgctgatggttgaatcggaagccaaggagctgaccgaagac
cagatgctgggcgccgtactgttcgcccacgacgaattccagtcggtgatcaaggccgtt
ggcgagctggctgcagaagccgccaagccaacctggagctggacgccgaaagcctggaac
accgagctgatcggcgcgatccgtggcgaattcggcgacgccgtttcccaggcctacacc
atcaccgtcaaggccgagcgctacgccaagctgggcgagctgcgtgaccaggtgatcgcc
aagttctccggcgaagaaggtcagccgaccgcagccgaagtgaaggaaatcttcggcgag
atcgagtaccgcaccgttcgcgaaaacatcgtcaacggcaagccgcgtatcgacggtcgc
gacaccaaaaccgtgcgtccgctgaacatcgaagtcggcgtgctgccgaaaacccacggt
tcggccctgttcacccgtggtgaaacccaggcgctggtcgtcgcgacccttggcactgcc
cgcgacgcacagctgctggacaccctggaaggcgagaagaaagaccccttcatgttgcac
tacaacttccctccattctcggtgggcgagtgtggccgcatgggcggcgcaggccgtcgt
gagatcggtcacggccgtctggctcgtcgttcggtacaggccatgctgccagccgccgac
gtgttcccgtacaccatccgcgtggtatcggaaatcaccgagtccaacggttccagctcc
atggcctcggtctgcggtgcttccctggccctgatggacgccggtgtgccgatgaaggcg
ccggtggccggtatcgccatgggtctggtcaaggaaggcgagaagttcgccatcctgacc
gacatcctgggtgacgaagatcacctgggcgacatggacttcaaggtcgccggtactgcc
aagggcgtcaccgcgctgcagatggacatcaagatcaacggcatcactgaagagatcatg
gagatcgccctgggccaggccctggaagcgcgcctgaacatcctcggccagatgaaccag
gtcatcggtacctcgcgtaccgaactgtcggaaaacgctccgaccatgatcgccatgaag
atcgacaccgacaagatccgcgacgtgatcggcaagggcggcgcaaccatccgtgccatc
tgcgaggaaaccaaggcttcgatcgacatcgaagacgacggctcgatcaagatcttcggc
gagtccaaggaagccgctgaagctgctcgtcagcgcgttctgggcatcaccgcagaagcc
gaaatcggcaagatctacgtcggcaaggtcgagcgcatcgtcgacttcggtgcattcgtc
aacatcctgcctggcaaggatggcctggttcacatctccatgctcagcgatgcacgcgta
gagaaagtgaccgacatcctcaaggaaggtcaggaagtcgaagtgctggtactggacgtc
gacaaccgcggccgcatcaagctgtccatcaaggacgttgctgctgccaaggcttcgggc
gtctaa
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