Pseudomonas rhizosphaerae: LT40_13445
Help
Entry
LT40_13445 CDS
T03339
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
prh
Pseudomonas rhizosphaerae
Pathway
prh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
prh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LT40_13445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prh03400
]
LT40_13445
Enzymes [BR:
prh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LT40_13445
DNA repair and recombination proteins [BR:
prh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LT40_13445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
AAA_11
Helicase_RecD
SH3_13
Viral_helicase1
AAA_22
UvrD-helicase
SLFN-g3_helicase
AAA_16
TraI_hel_assoc_N
AAA_28
AAA_25
Mg_chelatase
T2SSE
NTPase_1
AAA_5
Motif
Other DBs
NCBI-ProteinID:
AIS18329
UniProt:
A0A089YRS4
LinkDB
All DBs
Position
complement(2968766..2970847)
Genome browser
AA seq
693 aa
AA seq
DB search
MTRSFADLLPTPLDAQSLARLQPRTHTADLLALLERWVERGWLRALDKAFVVFLADLDPQ
GDPLVLLAAALASHQLGHGHVCLDLAATLQAPDFALSLPPEGDLQGGVALLPSQLLEGLG
VDAWLSSLANSPLVGDGDDTSGSSPLVLSSQRLYLRRYWAYERRIGDALRQRLEAHEPIP
DDLAQRLTQLFGTADGTRIDWQKLACALAARGAFSIVTGGPGTGKTTTVVRLLALLQGPA
VAQDKPLRIRLAAPTGKAAARLTESISLQVQSLEVDAAIKVRIPTEVTTVHRLLGSRPGT
RHFRHDAANPLPLDVLVVDEASMIDLEMMANLLDALPPHARLVLLGDKDQLASVEAGAVL
GDLCSQAEAGYYSPTTRAWLEQVSGEDLAHSGLLEGNERDHALAQQVVMLRHSRRFGEDS
GIGQLATRVNLQDAEGARALLQEGRHADVHWLPLKGEHDAALLRLLLDGHGRNSDGPQGY
RRYLEQIDAGRPPADTPLEDEAWATWARGLLNAFDEFQLLCAVRKGPWGVESLNARATQA
LTQARLIDGSQPWYEGRPVLMTRNDYGLGLMNGDIGIALMLPEGGERERMVLRVAFPRND
GQGGIRFVLPSRLNDVETVYAMTVHKSQGSEFAHTALILPDALNPVLTKELIYTGITRAK
HWFTLVESRKGVFEEAVRRKVKRLSGLMLGWRS
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgacccgctcttttgccgacctgttgccgactcccctggatgcgcagagccttgctcgg
ttgcagccccggactcacaccgcagacctgctggcgttgctcgaacgctgggtggagcgc
ggttggctgcgtgcgctggacaaggccttcgtggtgtttttggccgacctcgacccgcag
ggcgatcccctggtgctgctggctgccgctctggccagtcaccagttggggcacggacac
gtctgcctggacctggcggcgaccttgcaagcgccggattttgccttgtcgctgccgcct
gaaggcgatcttcagggcggtgttgcattgctgccgtcgcagttgctggagggcttgggt
gttgacgcctggttgagcagcctggcgaacagcccattggtgggcgacggggacgacact
tcaggcagctcgcccttggtgctttcgagccaacgcctatacctgcgtcgttactgggcg
tacgagcggcgtatcggtgatgcgttgcgccagcgtctggaggcgcatgagccgataccg
gacgatcttgcccagcgtttgacgcaattgttcggcaccgccgatggcacgcggatcgat
tggcagaaattggcctgcgccctggcggctcgcggtgccttcagtatcgtcacgggcggc
cctggaacgggcaagaccaccacggtggtgcgcttgctggcgctgttgcaggggcctgcc
gttgcgcaggacaaaccattgcgtattcgtctagcggcacccaccggcaaggcggcggct
cggctgacggaatcgatcagcctgcaggtccagagcctggaagtggacgcggcgatcaag
gttcgcattccgaccgaggtgaccacggtgcaccgtctgctcggcagccgtccgggcacg
cggcattttcgccatgatgcggccaaccctctgcccttggacgtgttggtggtcgacgag
gcctcgatgatcgacctcgaaatgatggccaacctgctcgatgcgctgccgccccatgcg
cggctggtgctgctgggggacaaggatcagttggcgtcggtcgaggcgggtgcggtgctg
ggtgacctgtgcagtcaggccgaggctggctactacagcccgacgacacgagcctggctg
gagcaggtgagcggtgaggatcttgcacacagcggtctgctcgaaggcaacgagcgtgat
cacgccttggcacaacaggtggtgatgttgcgccactcgcgtcgattcggcgaggacagt
ggcatcggccagctggctacccgggtcaacttgcaggacgccgaaggtgcgcgtgccttg
ctgcaggaaggtcggcacgctgatgtgcattggctgccactcaagggtgaacacgatgcg
gcgctgttgcgtctgctactggacggacacggtcgcaacagcgacggaccgcagggttac
cgacgttatctggaacagatcgatgcgggccgaccaccggccgatacgcctttggaagat
gaagcctgggcgacttgggcccgtggattgctgaatgctttcgacgagtttcagctgctg
tgcgccgtgcgcaaagggccttggggggtcgaaagcctgaacgcccgcgccacccaggcc
ttgactcaggcgcggttgatcgacggaagccaaccctggtacgagggccgtccggtattg
atgacccgcaacgactatggcctgggtttgatgaacggtgatatcggcatcgcccttatg
ctgcccgaaggtggcgagcgcgagcggatggtcttgcgcgtggccttcccgcgcaatgac
gggcagggcggcattcgcttcgtgctgcccagtcggttgaatgacgtggagacggtgtac
gcgatgacggtgcacaaatcccagggttccgaattcgcgcacacggcgctgatcttgcca
gacgcgttgaatccggtgttgaccaaggagttgatctacaccggaatcacgcgtgccaaa
cactggttcaccctggtcgaaagccgcaagggtgtgttcgaggaagcggtgcggcgcaag
gtgaaaaggctcagtgggttgatgcttgggtggaggtcttaa
DBGET
integrated database retrieval system
