Pseudomonas rhizosphaerae: LT40_14985
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Entry
LT40_14985 CDS
T03339
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
prh
Pseudomonas rhizosphaerae
Pathway
prh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
prh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LT40_14985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prh03400
]
LT40_14985
Enzymes [BR:
prh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LT40_14985
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LT40_14985
DNA repair and recombination proteins [BR:
prh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LT40_14985
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DZR
Motif
Other DBs
NCBI-ProteinID:
AIS18621
UniProt:
A0A089ZR21
LinkDB
All DBs
Position
complement(3317597..3318409)
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIAPHLEGQRVSRVIVRDRRLRWPIPEDLDARLSGQRIVAVERRAKYL
LINAEVGTLISHLGMSGNLRLVEAGLPALKHEHVDIELESGMALRYTDPRRFGAMLWSQD
PLNHELLLRLGPEPLTELFDGERLFQLSRGRSMAVKPFIMDNAVVVGVGNIYATEALFAA
GIDPRRAAGGISRARYLRLAVEIKRILTYAIERGGTTLRDFIGGDGQPGYFQQELFAYGR
GGQLCKVCGTTLREVKLGQRASVYCPRCQK
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacccgaagtagaaaccacccgtcggggcatcgccccgcacctggaaggg
cagcgtgtgagccgcgtcatcgtgcgcgaccgccgcctgcgctggccgattcccgaagac
ctggatgcgcgcctgtccgggcagcggatcgtggcggtcgagcgacgggccaagtacctg
ctgatcaacgccgaagtgggcaccttgatcagccatctcggtatgtcgggcaacctgcgc
ctggtcgaagccggtttgccggcgctcaagcacgaacacgtcgatatcgaactggaatcg
ggtatggccttgcgctataccgatccccggcgtttcggcgccatgctctggagccaggat
ccgctgaaccacgaactgctcctgcgcctgggccccgagccgttgaccgaactgttcgat
ggcgaaaggctgttccagctgtcgcgtgggcgcagcatggcggtcaagccgttcatcatg
gacaacgccgtggtggtgggtgttggcaatatctacgcgaccgaagcgctgttcgcggcc
ggcatcgatccgcgccgcgcggcggggggcatatcccgtgctcgctacctgcgtctggcg
gtcgagatcaagcgcatcctgacctatgcgatcgagcgcgggggcaccacattgcgtgac
ttcatcggtggcgatggccagcccggctacttccagcaggagttgttcgcctatggtcgc
ggcggacagttgtgcaaggtgtgcggcaccaccctgcgcgaggtcaagctgggtcagcgt
gcgagcgtgtattgcccacgctgccaaaaatga
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