Pseudomonas rhizosphaerae: LT40_17150
Help
Entry
LT40_17150 CDS
T03339
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
prh
Pseudomonas rhizosphaerae
Pathway
prh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LT40_17150 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prh03021
]
LT40_17150 (rho)
03019 Messenger RNA biogenesis [BR:
prh03019
]
LT40_17150 (rho)
Transcription machinery [BR:
prh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LT40_17150 (rho)
Messenger RNA biogenesis [BR:
prh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LT40_17150 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
NACHT
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AIS19025
UniProt:
A0A089YZU7
LinkDB
All DBs
Position
3800347..3801606
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLEMAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIASNITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRKIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLIDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgactgaactcaagcaaaagccgatcaccgatctgctcgaaatggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggatgtgattttctccctgttgaag
aagcacgccaaaagcggtgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttcctgcgttcggctgacgcctcgtacctggccggcccagacgacatctac
gtctcgcccagccagatccgccgcttcaacctgcgtaccggcgacaccatcgtcggcaag
atccggccgcccaaggaaggcgagcgttatttcgccctgttgaaagtcgataccatcaac
ttcgaccgcccggaaaacgcgaaaaacaagattctcttcgaaaacctcacgccactgttc
cctacggtgcgcatgaagatggaagccggcaacggttccaccgaagacctcaccggtcgc
gtcatcgacctgtgtgcaccgatcggcaagggccagcgtggcctgatcgtcgctccgccg
aaagcgggcaagaccatcatgctgcagaacatcgcgtcgaacatcacgcgcaacaacccc
gaatgccacctgatcgtcctgctgatcgacgagcgtccggaagaagtgaccgagatgcag
cgcaccgtgcgcggcgaagtggtcgcctcgaccttcgacgagccgccaacccgccacgtg
caagtggccgagatggtgatcgagaaggccaagcgcctggtcgagcacaagaaggacgtg
gtcatcctgctcgactccatcacccgtctggcgcgtgcctacaacaccgtgatcccgagc
tccggcaaggtcctgaccggtggtgtcgacgctcacgccctggagaagccgaagcgtttc
ttcggcgccgcgcgtaacatcgaggaaggcggttcgctgaccatcatcgccaccgcgctg
gtcgaaaccggctcgaagatggatgaagtgatctacgaagagttcaagggtaccggcaac
atggaactgcccctggaccgcaagatcgccgagaagcgcgtcttcccggccataaacatc
aaccgttccggtacccgtcgcgaagagctgctgaccgccgacgacgaactgcagcgcatg
tggatcctgcgcaagctgctgcacccgatggacgaagtcgcagccatcgagttcctgatc
gacaagctcaagcagaccaagaccaacgacgagttcttcctgtcgatgaaacgcaagtaa
DBGET
integrated database retrieval system
