Pseudomonas rhizosphaerae: LT40_17680
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Entry
LT40_17680 CDS
T03339
Name
(GenBank) RNA helicase
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
prh
Pseudomonas rhizosphaerae
Brite
KEGG Orthology (KO) [BR:
prh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
prh03009
]
LT40_17680
Enzymes [BR:
prh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LT40_17680
Ribosome biogenesis [BR:
prh03009
]
Prokaryotic type
rRNA helicases
LT40_17680
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
P-loop_SecA
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
AIS19128
UniProt:
A0A089YRQ6
LinkDB
All DBs
Position
complement(3917547..3918932)
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AA seq
461 aa
AA seq
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MTTIATAFNTLPLSAAMLANLESLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAF
GIGLLNPINPRYFGCQALIMCPTRELADQVAKEIRRLARAEDNIKVLTLCGGVSFGPQIA
SLEHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLVLDEADRMLDMGFYDSIADIIEQTPER
RQTLLFSATYPVGIKQLSSKFMRDPQQVKAEALHADSQIEQRFYEISPDDRMAAVVRALG
HFRPQSCVAFCYTKQQCQEVVDHLTSKGISAVALHGDLEQRDRDQVLAMFANRSTSVLVA
TDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGLAISFVAPAEAHRAQAIE
QLQKSPLAWAELDSLTSKGGEPLLPPMSTLCIGAGRKDKVRPGDILGALTGDAGIPGTQV
GKIAIFDFQAFVAVERGIAQQALQRLNSGKIKGRSLRVRIL
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccattgccactgctttcaacacgctgcccctgtccgccgccatgctggccaac
cttgaatccctcgggtatgcccagatgacgccgatccaggcgcagagcttgccggtgatt
ctcaagggcatggacctgatcgcccaagccaagaccggcagcggcaagacggccgcgttc
ggcatcggcctgctgaacccgatcaacccgcgctatttcggctgccaggcgctgatcatg
tgccccacccgcgagctggccgaccaggtggccaaggaaatccgccgcctggcgcgtgcc
gaagacaacatcaaggtgctgaccctgtgcggcggcgtgtcgttcggcccgcagatcgct
tcgctggagcacggcgcgcacatcatcgtcggcacgccgggacgtatccagcagcacctg
cgcaagggttcgctggtgctcgacgggctcaacaccctggtgctcgacgaagctgaccgc
atgctcgacatgggtttctacgattccatcgccgacatcatcgagcagactccggaacgc
cggcagaccctgctgttctcggccacctacccggtcgggatcaagcagctgtcgtccaag
ttcatgcgcgatccgcagcaggtcaaggccgaggctctgcatgccgacagccagatcgag
cagcgtttctacgagatttcgccggatgaccgcatggccgccgtggtgcgcgccctgggc
cacttccgcccgcagtcgtgcgtggcgttctgctacaccaagcagcagtgccaggaagtg
gtcgatcacctgaccagcaagggcatcagcgccgtggcgctgcatggcgacctggagcag
cgcgaccgcgaccaggttctggccatgttcgccaaccgcagcacttcggtgctggtggcg
accgatgtggccgcccgcggcctggacatcgatgccctggacatggtgatcaacgtcgag
ctggcgcgcgattcggaaatccacatccaccgtgtgggccgtaccggtcgcgccggggag
aaaggtttggcgatcagcttcgtcgctccggccgaggcgcatcgggcgcaggccatcgag
caactgcagaaatcgccactggcctgggccgagctcgacagcctgacgtccaagggcggc
gagccactgctgccgccgatgagcaccctgtgcattggtgccgggcgcaaggacaaggtg
cgtccgggcgatatcctcggcgcactcaccggcgatgcgggcatccccggcacccaggtc
ggcaagatcgccatctttgatttccaggccttcgtggccgtggaacgcgggatcgcccag
caggcgttgcagcggctgaacagcggcaagatcaagggccgttcgctgcgcgtgcggatt
ctctga
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