Pseudomonas rhizosphaerae: LT40_19285
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Entry
LT40_19285 CDS
T03339
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
prh
Pseudomonas rhizosphaerae
Brite
KEGG Orthology (KO) [BR:
prh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prh03019
]
LT40_19285
Enzymes [BR:
prh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LT40_19285
Messenger RNA biogenesis [BR:
prh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LT40_19285
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
Helicase_C
DEAD
ResIII
HA2_N
Flavi_DEAD
AAA_30
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AIS19415
UniProt:
A0A089Z105
LinkDB
All DBs
Position
4284352..4286874
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AA seq
840 aa
AA seq
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MTSLPIDAALPALLKALHDRNEAVLQAPPGAGKTTRVPLALLDQPWLAGQTIVMLEPRRL
AARAAAERMAKEVGEAVGETVGYRIRLESKIGPRTQIEVVTEGILARRLQDDPALDGVGV
VIFDEYHLRNLDSDLALALCLSARELLRDEPPLKLLLMSATLEGARLSKVLNDAPVVTSE
GRMYPVSTVWGNPYQPGERIDARVTDTCLAAINEQSGSVLVFLPGQAEIRRVAEDLKEQL
SSRPEVIVCPLYGDLDLNAQRAAIDPAPKGSRKIVLATNIAETSLTIEGVRVVVDSGLER
VPKFDPRSGMTRLDTQRISKASATQRAGRAGRLEPGICYRLWSESQHEQMAGYSTPEILQ
ADLAALALQLARWGMKPEEMTWLDQPPSAPFGQARDLLKRLGALDNAGQLTAHGSAMSVL
PAHPRIAHMLIKGNAMGLDDLACNIAALLGEKDILRGAGADLHTRLSALSGEQHARRSGG
SLQRVKQSARQYRSLLRGKPSSPVSEPDHPRWVGCLLAFAYPDRIGLQRRASVSEYRLSN
GRAAVFSEPDALTKHEWLVVADLGSRQGQREERIYLASDLDPALFDDELADLVRSVDEVD
WDEREGVLKAERQLKVGQLILSTKPLPSLDEQTRSLALVNLVRRKGIELLPWNPELRQWQ
ARVDLLRQLDIQNGQAESKWPDLSDTNLLDSLEEWLAPYLSKVTRLSHFSQLDLGSIVRN
LLLWPLPQELEAQAPQTILVPSGSNIRIDYSQHPPILAVRLQELFGLAETPRIAQGKQPL
ILHLLSPARRPVQVTQDLANFWRSTYLEVKKDLKGRYPKHYWPEDPLVAEATARAKPRKP
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgttgccgattgacgccgccttgccggctctcctcaaagctctccacgatcgc
aatgaggccgtgctgcaggcgccgcccggcgccggtaaaaccacacgcgttccgctcgcg
ctgctggatcagccgtggctggccgggcagaccatcgtcatgctcgaaccccgtcgactg
gccgctcgcgcagcggcagaacgaatggcaaaggaagttggggaggcggtgggcgaaacc
gtcggctaccgaattcgccttgaaagcaagataggcccgcgaacccagatcgaagtggtg
actgaaggtatcctggctcgtcggctccaagatgaccctgcactggatggtgtgggcgtg
gtcatcttcgatgagtaccaccttcgaaatcttgactctgatcttgcactggctctgtgc
ctgagtgctcgcgaactgctgcgtgatgagcccccgctgaagctgctcctgatgtccgca
acgctggaaggcgctcgcctttcaaaggtgctgaacgatgcgcctgtggtcaccagtgaa
gggcggatgtatccggtctcgacggtttggggtaacccataccagccgggcgagcgaatc
gatgcgcgagtcacggacacctgcttggccgccatcaatgaacagtctggaagcgttctg
gttttccttcctgggcaggcagagattcggcgtgtggcagaagacctcaaggagcagttg
agcagccgtccagaggtgatcgtatgcccgctgtacggtgacctcgacctgaacgctcag
cgtgctgctattgacccggcacccaaaggctcccggaagatcgtactggccacgaacatc
gccgagaccagcttgaccatcgaaggcgtcagggtcgtagtggacagcggtcttgagcga
gtaccgaagttcgatcctcgcagtggaatgacccgactcgacacacagcgtatctcgaag
gccagcgctactcagcgagcagggcgggcagggcgattggaaccaggtatctgctatcgc
ctatggtcggaatcgcagcatgagcaaatggccggctacagcacacctgagatcctgcag
gcggatctcgcagccttggcactccagttggcccggtggggaatgaagccggaagagatg
acctggctcgaccaaccgccgtcagctcctttcggccaagccagagacctgctgaaacgc
ctgggtgcactcgacaatgctggacagctcacagcccatggatcagccatgagcgtgctc
ccggcacatcctcggatcgctcacatgctcatcaaaggcaatgctatgggcttggatgac
ctggcgtgcaacatcgcggcgctgctgggtgaaaaggacatcctgcgtggagcaggtgcc
gaccttcacaccaggctgagtgccttgtcaggcgagcaacatgcacgtcgcagcggtggc
tccctccagcgggttaagcagtctgctcggcagtaccgatccttgctgcgtgggaagccc
tctagccctgtcagcgagcccgatcacccaagatgggtaggatgcctcctggcgttcgcc
tatcctgaccgaatcggtctgcagaggcgtgcgagtgtatccgaataccgtctctccaac
ggtcgtgctgcggtgttctcagagcccgatgctctcaccaagcacgagtggttggtggtg
gccgacctgggtagccgacaagggcagcgcgaggagcggatctacctggcgagtgacctc
gatccggctttgttcgatgacgagctggctgaccttgtgcggtctgtggatgaggtcgac
tgggacgagagggaaggagtgctcaaggcagagcggcagttgaaggttgggcaactcatc
ttgtcgacgaaacccttgccgagtcttgatgagcaaactcgttcattggcgttggtcaac
ctggtgaggcgcaaaggaattgaacttctgccttggaacccggagttacgccaatggcag
gcgcgggtcgatctgctgcgtcagctggatattcaaaatggccaggcagaaagcaagtgg
cctgatctcagcgatacgaacctcctggattcgcttgaagaatggctcgcgccgtacttg
agcaaagtcacgagactcagtcacttcagccagttggatttggggtcgatagtcagaaac
ctcctgctttggccgcttccgcaggagctggaggctcaagcgcctcagacgatcttagtg
ccttccggctcgaatatccgaattgactactcgcagcatccacccatcctcgctgtgcgg
ctgcaggagctgtttggcctggcagaaactccacgcatagcccagggaaaacagccgctg
attctgcatcttctgtcgccggcccgcaggccggtacaggttacccaggatcttgcgaac
ttttggcgcagcacctacctggaagtgaagaaggatcttaagggccgatacccgaagcac
tattggcccgaagatccattggtggcagaagcgactgcgagagccaagcccaggaagcct
tga
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