KEGG   Pseudomonas rhizosphaerae: LT40_20455
Entry
LT40_20455        CDS       T03339                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
prh  Pseudomonas rhizosphaerae
Pathway
prh02020  Two-component system
Brite
KEGG Orthology (KO) [BR:prh00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    LT40_20455
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:prh03021]
    LT40_20455
Transcription machinery [BR:prh03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     LT40_20455
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_ECF HTH_23 Sigma70_r4 HTH_IclR HTH_7 HTH_24 GerE HTH_38 HTH_29 TnsD HTH_10 Trp_repressor HTH_28 HTH_11 LacI DUF1492 HTH_40
Other DBs
NCBI-ProteinID: AIS19632
UniProt: A0A089YYT9
LinkDB
Position
complement(4521416..4521922)
AA seq 168 aa
MTSPASHSIEGLYLVHRRWLTEWLRSRLGCPDNAADLAQDTFMRLLTAREVTPIHEPIRE
PRAFLTTVAKRVLFNHYRRQDLERAYLEALAQMPEPLAPCEEHRAIILQTLLELDALLNG
LPVVVKRAFLMAQVDGLGYREIADELGISLATVKRYLHKAAMRCYFAL
NT seq 507 nt   +upstreamnt  +downstreamnt
gtgacttcccctgcctcgcattcgatcgagggcctctacctcgttcatcgccgctggttg
accgaatggctgcgcagccgcctgggctgtccggacaatgccgccgacctcgcccaggac
accttcatgcgtctgctgaccgcgcgtgaagtcactcccatccacgagcccatccgcgag
ccacgcgcctttctcaccacggtggccaagcgcgtgctgttcaaccactaccgccgccag
gacctggaacgtgcctacctggaggcactggcgcagatgccagagcccctcgcaccctgc
gaagagcaccgggcgatcattctgcagacgctgctggaactggacgcgctgctcaatggc
ctgccagtcgtggtcaagcgcgccttcctgatggctcaggtcgacggcctgggctaccgc
gaaatcgccgacgaactcggcatttccctggccacggtgaagcgctacctgcacaaggca
gccatgcgctgctactttgcgctgtga

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