Pseudomonas rhizosphaerae: LT40_20455
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Entry
LT40_20455 CDS
T03339
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
prh
Pseudomonas rhizosphaerae
Pathway
prh02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
prh00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LT40_20455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prh03021
]
LT40_20455
Transcription machinery [BR:
prh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LT40_20455
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
HTH_23
Sigma70_r4
HTH_IclR
HTH_7
HTH_24
GerE
HTH_38
HTH_29
TnsD
HTH_10
Trp_repressor
HTH_28
HTH_11
LacI
DUF1492
HTH_40
Motif
Other DBs
NCBI-ProteinID:
AIS19632
UniProt:
A0A089YYT9
LinkDB
All DBs
Position
complement(4521416..4521922)
Genome browser
AA seq
168 aa
AA seq
DB search
MTSPASHSIEGLYLVHRRWLTEWLRSRLGCPDNAADLAQDTFMRLLTAREVTPIHEPIRE
PRAFLTTVAKRVLFNHYRRQDLERAYLEALAQMPEPLAPCEEHRAIILQTLLELDALLNG
LPVVVKRAFLMAQVDGLGYREIADELGISLATVKRYLHKAAMRCYFAL
NT seq
507 nt
NT seq
+upstream
nt +downstream
nt
gtgacttcccctgcctcgcattcgatcgagggcctctacctcgttcatcgccgctggttg
accgaatggctgcgcagccgcctgggctgtccggacaatgccgccgacctcgcccaggac
accttcatgcgtctgctgaccgcgcgtgaagtcactcccatccacgagcccatccgcgag
ccacgcgcctttctcaccacggtggccaagcgcgtgctgttcaaccactaccgccgccag
gacctggaacgtgcctacctggaggcactggcgcagatgccagagcccctcgcaccctgc
gaagagcaccgggcgatcattctgcagacgctgctggaactggacgcgctgctcaatggc
ctgccagtcgtggtcaagcgcgccttcctgatggctcaggtcgacggcctgggctaccgc
gaaatcgccgacgaactcggcatttccctggccacggtgaagcgctacctgcacaaggca
gccatgcgctgctactttgcgctgtga
DBGET
integrated database retrieval system