Phycobium rhodophyticola: N4R57_05680
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Entry
N4R57_05680 CDS
T11629
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
prhd Phycobium rhodophyticola
Pathway
prhd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N4R57_05680 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prhd03400
]
N4R57_05680 (uvrB)
DNA repair and recombination proteins [BR:
prhd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N4R57_05680 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
N4R57_05680 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
AAA_22
AAA_19
UB2H
Kinesin
IstB_IS21
AAA
DUF87
eIF3_p135
AAA_7
Motif
Other DBs
NCBI-ProteinID:
UYV39515
LinkDB
All DBs
Position
complement(1135601..1137766)
Genome browser
AA seq
721 aa
AA seq
DB search
MMHAPAEDVKTREKLEGGKRIVMHTEFTAAGDQPTAIAELTAGITEGERNQVLLGATGTG
KTFTMAKVIEETQRPAIILAPNKTLAAQLYGEMKSFFPENSVEYFVSFYDYYQPEAYVAR
SDTYIEKESQINEQIDRMRHSATRALLERDDVIIVASVSCIYGIGSVETYGAMTQDLKVG
AMYDQRAVIADLVAQQYRRNDQAFQRGSFRVRGDSLEIFPAHLEDRAWRLSFFGEELESI
VEFDSLTGEKTGTMEHIRIYANSHYVTPKPTMTQAIQHIKTELKQRLDQLVNDGKLLEAQ
RLEQRTNFDLEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEFIPDNAIVFADESHVSV
PQIGGMYKGDYRRKFTLAEHGFRLPSCMDNRPLKFEEWDAMRPQSVFVSATPSAWELEQA
GGVFAEQVIRPTGLIDPQVEIRPVETQVDDLLDEIRIVAEKGMRVLVTTLTKRMAEDLTE
YLHEQGIRVRYMHSDIDTLERIEILRDLRLGAFDVLIGINLLREGLDIPECGLVAILDAD
KEGFLRSETSLIQTIGRAARNAEGRVIMYADRITGSMERALGETDRRRAKQIAYNEEHGI
TPSTIKKNVEDVLSGLYQGDTDMSRVTAKIDKPLHGANLETVLEGLRTDMRKAAENLEFE
EAARLRDEVKRLEAVDLAIADDPLARQYAVEKASEAAVKSKGRSTAGRPGQRGGNVKRRG
R
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgatgcacgccccggccgaggatgtgaaaacgcgtgaaaaactcgaaggcggcaagcgc
atcgtgatgcacaccgaattcaccgccgccggggaccaacccaccgcgattgccgaactg
acagcaggcatcaccgaaggcgagcgcaatcaggtgctcttgggcgcgaccggcacgggc
aaaaccttcaccatggccaaggtgatcgaagaaacccaacgcccggccatcatcctcgcc
cccaataaaaccctcgccgcccagctttacggcgagatgaagagctttttccccgagaac
tcggtcgaatatttcgtcagcttctatgactattaccagcccgaagcctatgtcgcgcgc
tccgacacctatatcgagaaagaaagccagatcaacgaacagatcgacaggatgcgccac
tccgctacgcgtgcgcttctggaacgcgacgacgtgatcatcgtcgcctcggtgtcgtgt
atctacggcatcggctcggtcgaaacctacggcgcgatgacacaggatttgaaagtcggc
gcaatgtatgaccaacgcgccgtcatcgctgacctcgtggcccagcaataccgccgcaat
gaccaagccttccagcgcggctcgttccgggtgcgcggcgacagtctcgaaatcttcccc
gcccacctcgaagaccgcgcatggcggctgtctttcttcggggaagagcttgaatccatt
gtcgaattcgactccctcaccggcgagaaaaccggcacgatggagcatatccgcatctat
gccaactcgcattacgtcaccccgaaaccgacgatgacccaagcgatccagcacatcaag
accgagctcaaacagcgcctcgaccagctggtgaatgacggcaaactgctcgaagcgcaa
cgcctcgaacagcgcaccaatttcgatctcgagatgctagaggccaccggcgtctgcaac
gggatcgagaactactcccgctacctcaccggccgcgcccccggtgagccgccccccacc
ctgttcgaattcattcccgacaacgccatcgttttcgccgatgaaagccacgtctccgtg
ccccagatcggcggcatgtataagggcgactaccggcgcaaattcacgctggccgaacac
ggcttccgcctgccgtcctgcatggacaaccgccccctcaagttcgaggagtgggacgcc
atgcgcccgcaatccgtctttgtctctgccaccccctcggcgtgggagcttgaacaggcc
ggcggcgtctttgccgaacaggtgatccgccccaccggcctgatcgacccacaggtcgaa
atccgcccggtcgaaacccaggtcgatgacctcctcgacgaaatccgcatcgtcgcggaa
aagggcatgcgcgtgctcgtcaccacgctgaccaaacgcatggccgaggatctgaccgaa
tatctgcacgaacagggcatccgcgtgcgctatatgcactcggacatcgacacgctggaa
cgcattgaaatccttcgcgatttacgcctcggcgcgtttgacgtgctgatcggcatcaac
ctgctgcgcgaagggctcgacattcccgaatgcggcctcgtcgccattctggatgcggac
aaagaaggcttcctgcgctcggaaacctcgctgatccaaaccatcggtcgcgccgcgcga
aacgccgaaggccgcgtcatcatgtacgccgaccgcatcaccggctcgatggaacgcgcc
cttggcgaaaccgaccgccgccgcgccaaacagatcgcctataacgaggaacacggcatc
accccctcgacgatcaagaagaacgtcgaagacgtgctgtccggcctctaccaaggcgac
accgacatgtcccgcgtgacggccaagatcgacaaacccctgcacggcgccaatctcgaa
accgttctcgaaggcctgcgcaccgacatgcgcaaagccgccgagaacctcgaattcgaa
gaagccgcccgcctgcgcgacgaggtcaaacggctcgaggcggtcgatctggcgattgcc
gacgaccccctcgcgcggcaatatgcggttgaaaaggcctcagaggccgccgtaaagtcc
aaaggccgctcaacggccggacggccggggcaaagaggtgggaatgtgaagcggaggggg
cggtaa
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