Porifericola rhodea: PZB74_00650
Help
Entry
PZB74_00650 CDS
T09201
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
prho
Porifericola rhodea
Pathway
prho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PZB74_00650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prho03019
]
PZB74_00650
Enzymes [BR:
prho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PZB74_00650
Messenger RNA biogenesis [BR:
prho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PZB74_00650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
AAA_22
Utp25_C
DsrH
Motif
Other DBs
NCBI-ProteinID:
WKN31868
LinkDB
All DBs
Position
complement(143732..144994)
Genome browser
AA seq
420 aa
AA seq
DB search
MTFKELNLIAPILKALDQEGYDKPTPIQAQSIPAILQGKDLLGCAQTGTGKTAAFAIPIL
QLLDKQPRGKHKNPIRSLILTPTRELAIQIGESFSAYGRHLPLRHTVIFGGVSQKAQQDA
LRKGPDTLIATPGRLLDLMQQGFIDLRSLELFVLDEADRMLDMGFVHDVKRVIARLPKNR
QTLFFSATMPPDIVELADTILDSPVKVEVTPVSSTAETIQQSVYYVDKGHKKALLNHILL
QDDSIASALVFTRTKHGANKVTKDLMKKGITAEAIHGNKSQNARQNALKNFKNRRTRVLV
ATDIAARGIDVDELSHVINYELPNVPETYVHRIGRTGRAGAEGVAYSFCDQEEKAYLRSI
HKLIDQRIAVVEDHPYPLGTINPSEQQQQQQSTAGREQKKKFNFRKRNNSSSAPKRKFRS
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagaattgaacctgatcgcgcctatcttaaaggccttagatcaggagggt
tatgataaacccacgcctattcaggcacaatccatacccgctatattacaaggaaaagat
cttttaggctgtgcacaaaccggtaccgggaaaactgcggctttcgcaattcctatactg
caacttttagacaaacagccaagaggaaagcataaaaaccctatccgctcactaatttta
accccaacaagggaattagcgatccagattggagaaagctttagtgcttatggacgtcat
ctgcctttaagacataccgttatctttggaggagtatcgcagaaggctcagcaagacgct
ctcagaaaaggtcctgataccctgattgctactcctggccgccttctggatctgatgcag
caaggctttatagatcttcgtagcctggaactcttcgtattagacgaagccgaccgtatg
ctggatatgggttttgtacacgatgtaaaaagagtaattgctcgcctgcctaaaaacagg
caaacccttttcttctcggcaaccatgcccccagatatagtggaactagccgataccata
cttgatagtccggtaaaggtagaagttaccccggtatcttccactgccgaaacaattcag
cagtcggtatactatgtagacaaggggcataaaaaagcgttgcttaaccatatattgctg
caggacgatagcattgccagtgccctggtatttacccgcaccaaacatggagctaataag
gtaaccaaagacctgatgaagaaaggtattacggctgaagctattcatggcaataagtcg
caaaatgccagacaaaatgcactgaaaaattttaaaaatcgccgtacgcgagtattagta
gcgactgatattgctgccaggggtattgatgtggatgagctctctcatgtaatcaattat
gagctgcctaatgttcctgagacctatgtgcaccgaattgggagaactggtagagctggt
gcagaaggagtagcctactctttttgcgatcaggaggagaaagcatatcttagaagtata
cataaacttatcgaccagaggatagcggtggtagaagatcacccttatccattgggtact
attaatccctctgagcagcagcaacagcaacaaagcacagcaggcagagaacagaaaaag
aagtttaattttagaaaaagaaataatagttcgtccgctccaaaaagaaagtttcgtagt
tag
DBGET
integrated database retrieval system
