Porifericola rhodea: PZB74_00790
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Entry
PZB74_00790 CDS
T09201
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
prho
Porifericola rhodea
Pathway
prho02020
Two-component system
prho02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
prho00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PZB74_00790 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PZB74_00790 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prho03021
]
PZB74_00790 (rpoN)
Transcription machinery [BR:
prho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PZB74_00790 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_12
LacI
SF3b1
MarR
Motif
Other DBs
NCBI-ProteinID:
WKN31894
LinkDB
All DBs
Position
187722..189170
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AA seq
482 aa
AA seq
DB search
MQKLGLSQTLSQKLSPQQIQFIKLLQIPTAELEARIEQELEVNPALEEGRDEDEGITSSE
DDFDSDAERDDLNDELSIEDYLSEDEFGGYKMYGDGNYSDEEDRDMPIPTNTTLSEQLIS
QLNFLALDDRRHQIGLQLIGSIESDGYIRRELEAIINDLAFSQNIDTDLDEVEEILTQIQ
QFDPAGIAARDLQECLVLQLERKADPDKYHKLAIDILKDHFKEFTKKHFDKICRKQGIDE
NSLREAISIITKLNPKPGGFVDSTARTQYIIPDFILNNNNSKLELSLNSRNAPELKISRS
YSDMLQAYDKNKKDKKLKETVTFVKQKLDSAKWFIDAIRQRQQTLLTTMETIIKYQYDFF
LTGDESKLKPMILKDIANEIGMDISTVSRVANSKSVQTEFGVYPLKYFFSEGIATESGED
VSSREVKNYLKGLVDNEDKRKPLSDDKLEKLLKEKGYNIARRTVAKYREQLQIPVARLRK
EL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagcttggtttaagccagaccttaagtcagaaactttctcctcagcaaatacag
tttattaagctcttacaaattcctacggccgagttagaagccaggattgagcaggaactg
gaagtcaaccctgctttagaagaaggacgtgatgaagacgagggaattacgagtagcgaa
gacgactttgatagtgatgctgagagagacgatcttaacgatgagttaagtattgaagat
tatctgtctgaagatgaatttggtggttataaaatgtacggcgacggaaactactccgac
gaggaagaccgtgatatgcccatacctaccaatactactttgagcgagcagcttatctct
cagctcaattttttagcgttggatgatagaaggcaccagattggccttcaacttatagga
agtattgaaagcgatggctacatacgcagagagctggaagcaatcattaacgatctagct
ttttcgcagaatatagatactgacctggatgaggtggaagagattcttactcaaatccaa
cagtttgaccctgcgggtattgcagcaagagacctacaggaatgcttagttttacaactg
gaaagaaaagctgaccctgataaataccataagctagctatagatattcttaaagatcac
tttaaagaatttactaaaaagcactttgacaagatttgccgtaagcagggcatagatgaa
aactctttacgcgaagctatcagtattattactaagcttaatcccaagcctggtgggttt
gtagacagtactgcccgtacacaatacattattcctgactttattcttaacaacaacaat
agcaaactagagctttctcttaactccagaaacgcgccagagcttaaaatcagtcgctcg
tactctgatatgcttcaggcttatgataagaacaaaaaggacaagaagttaaaagaaacc
gttacttttgtaaagcagaagctagactctgccaaatggtttatagacgccatacgtcag
cgtcagcaaacgctgctaacaacaatggaaaccattattaagtatcagtacgactttttc
ttaactggcgacgagagcaaactaaaacccatgattctgaaagatattgctaatgagata
ggtatggatatttcaacagtatccagagtagctaacagcaaatcggtacaaactgagttt
ggagtttaccctcttaaatactttttctcagaaggtattgccactgaatcgggcgaagat
gtaagtagccgcgaagtgaaaaactaccttaaaggcctggtagataatgaggacaaaaga
aagcctttgtctgacgacaaacttgaaaaactgcttaaagaaaaagggtataatattgcc
aggcgtactgttgctaaatacagagagcagttacaaatacctgtggcaaggctaagaaag
gaattgtaa
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