Porifericola rhodea: PZB74_04540
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Entry
PZB74_04540 CDS
T09201
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
prho
Porifericola rhodea
Pathway
prho03030
DNA replication
prho03430
Mismatch repair
prho03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
prho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PZB74_04540 (dnaE)
03430 Mismatch repair
PZB74_04540 (dnaE)
03440 Homologous recombination
PZB74_04540 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prho03032
]
PZB74_04540 (dnaE)
03400 DNA repair and recombination proteins [BR:
prho03400
]
PZB74_04540 (dnaE)
Enzymes [BR:
prho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PZB74_04540 (dnaE)
DNA replication proteins [BR:
prho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PZB74_04540 (dnaE)
DNA repair and recombination proteins [BR:
prho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PZB74_04540 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
RNase_T
Prismane
Motif
Other DBs
NCBI-ProteinID:
WKN32610
LinkDB
All DBs
Position
complement(1102704..1106897)
Genome browser
AA seq
1397 aa
AA seq
DB search
MYLIFDTETTGLPRDYNAPITDTDNWPRIVQLSWQLHAADGKLLNQQDYIVKPDGFTIPF
NSEKVHGISTERALKEGYPLEEVLKIFNKDLERTQLVIGHNVDFDINITGAELVRTSLPT
DLMNIQKLDTKDESTDYCKIPGGRGGKYKWPTLSELHKKLFGVGFDEAHNSAFDVDATAR
CFFGLLKEKVVRPYTEEIPLEKIQYEAPDLEEASRAADKKKESESPTIPVSSQPAKEIKT
APFSHLHVHSQYSILQSTANIKSIIATAKEQEMPAVAITDLGNLFGAFKAVTEGKKQGIK
VIIGCDVYVVEDRHQKKFTKDMKDQRSLQLLLAKDQNGYRNLSKLCSLGFIEGYYAGYPR
VDKELIEKYKEGLIATTGSITAEIPNLILNVGEHQAEEAFVWWKDTFGEDFYVELQRHGL
EEENRVNDVLLRFANKYNVKVIATNDVYYTKKADANAHDTLLCVKNGDVMSMPKGRGRGF
RFGMPNDEFYFKSEDEMKRLFQDLPEAITNTYEIVEKTSELTLERDILLPRFEIPDEFED
QDDYLRHLTYEGAKSHYGEVTAEIRERIDHELKIIKDMGFPGYFLIVQDFINAARSMGVK
VGPGRGSAAGSVVAFCTGITNIDPIKYDLLFERFLNPERISMPDIDIDFDDDGRQDVIEY
VIKKYGRNQVAQIVTFGTMAPKMSIRDVARVSELPLPEANRIAKLVPEKPGTSFEQALAE
VPELQEIKRGRGKPSEVVNLAHTLVGSVRGTGIHAAGVIIAPDDLLEYIPVKTDKDSDLF
ITQFDGSVVESAGMLKMDFLGLKTLTIIKTALENIKQNHGVEIDIDTIPLDDEETYKLYQ
RGDTVGTFQFESEGMRQWLQKLKPTNIEDLIAMNALYRPGPMQFIPNFIDRKHGREEVEY
PHELLEGILKNTYGIMVYQEQIMQTAQILGGYSLGGADLLRRAMGKKKIEEMNKQRVIFV
KGAYEKHGIEKAKAEEVFSIMEKFAQYGFNRSHSAAYSVVAYQTGYLKANYPAEYMAAVL
THNMNNSDKVTAFLDECKRQGISVLGPDVNESRYFFGVNKEGQIRFGLGAVKGAGENAVS
AIIEERDEKGLYQDIFEFTKRINLRQVNKKTLEVLAMAGAFDCFDSAHRRQYLYAEDGEI
SLIEKASKYALTLQQEEQAAQQSLFGGSGGLEVPVPKIPDCEPYSEIEKLKIEKEVIGFY
ISGHPLDQFKIEIENFCTCTVDNITNYKNQDIAVAGIVTSYQERQTRTGKPFGLVSIEDY
QSSLNLAFFGEDFLSNRHRLSVGEFVYVRGKVEERYNQPDVWELRPQSVQLLSEIREKMT
KGVQLNIPVEVLDESLITNLESLLKDYQGSCSLKVYLRDGLDNLNVDTMSRKYKVNPVNG
FFEKIEKLKDITYKIDN
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgtacctaatctttgatacagaaactaccggacttccaagggattataatgcgccaata
acagatactgataactggcctcgtattgtacagctttcatggcagctacacgctgctgat
ggtaaactactaaaccagcaggactatatagttaaacctgatggctttactattcctttt
aattcagaaaaagttcatggaatttccaccgaacgagctttaaaagaaggatatcccctg
gaagaagtgcttaaaattttcaataaagatctggagagaacccagttagttattggacat
aatgtagattttgatatcaatatcaccggggcagagttggtaagaacaagtttacctact
gacttgatgaatatccagaaattggatacaaaagatgagtccactgactattgcaaaatt
cctggcggaagaggaggtaaatataagtggcctaccctttcagagctacacaaaaaattg
tttggagttggctttgacgaagcgcacaactcggcttttgacgtagatgctactgctcgt
tgcttctttggtttgcttaaagaaaaagtagtcaggccgtatacagaagaaattccttta
gaaaaaattcagtacgaagcgcctgatctggaagaagccagccgtgctgctgacaaaaag
aaagagtctgagtctcctaccatacctgtaagttctcagcctgccaaggagatcaagact
gcccctttcagtcatcttcatgtacattctcagtactcaattttgcaaagcacggctaat
attaaaagtattattgctactgcaaaagagcaggaaatgcctgccgtagcaatcaccgac
cttggcaacttatttggggcatttaaggcagttaccgaagggaaaaaacagggcattaaa
gttataattggctgtgatgtctatgtggtagaagatcgtcaccagaagaagtttactaaa
gacatgaaagatcagcgtagcttacagctattgctggccaaagaccagaatggataccgt
aatctttccaaactttgttcattgggctttattgaagggtattatgccgggtacccgcgt
gtagataaggaacttattgaaaagtacaaggaagggcttattgccaccacaggtagtata
actgcagaaatacctaaccttattcttaacgtaggtgaacatcaggcagaggaggctttt
gtctggtggaaagatacgtttggagaggatttttatgtagagctacagcgccatggtttg
gaagaagagaatcgcgtaaatgatgtgcttttgcggtttgccaacaaatacaatgtaaaa
gtaattgcaactaatgatgtttattataccaaaaaagctgatgcgaatgctcatgatacc
ttgctctgtgtaaagaatggtgatgtaatgtcaatgcctaaaggtagaggtcggggcttc
cgctttggtatgcctaacgatgaattctactttaagtctgaggatgagatgaagcgtctt
ttccaggacttgccagaggctattacgaacacctatgagattgtagaaaaaacaagcgaa
cttacgcttgagcgagatatacttttaccccgttttgagatacccgatgagtttgaagat
caggatgattatctgcgtcacctaacttatgagggagctaaaagccattatggagaagtt
actgccgaaataagggaacggattgaccatgagctaaaaattattaaagacatggggttt
ccgggctatttcctgattgtacaggactttattaacgctgcacgtagcatgggagttaaa
gtaggtcccggccgggggtctgcggcaggttctgtggttgctttttgtacgggtattacc
aatatagatcctatcaaatatgatctgctgtttgagcgtttcctaaatccggagcgtatc
tcaatgccagatattgatattgactttgatgatgatggacgacaggatgtaattgaatat
gtaatcaaaaaatatggacgtaatcaggtagctcaaattgttaccttcggtaccatggct
cctaaaatgtctatccgagatgttgccagagtaagtgaactacctttgccagaagctaat
agaatagcgaaattagttcccgaaaagccagggacctcttttgaacaagcacttgctgag
gttcctgaattgcaggagattaaaagagggagaggaaaaccttcagaggtagtaaatcta
gctcatacactggtaggctctgtaagaggaactggtatacatgccgcaggggttattatt
gctccagatgacctgttggagtatatcccagtaaaaactgataaagattctgatcttttc
atcacacagtttgacggctctgtcgttgagtcagcaggaatgttaaagatggactttctg
gggctaaaaacccttaccatcattaaaactgcgctggaaaatataaagcaaaaccatggg
gtagaaatagatattgataccatccctcttgatgatgaggaaacttacaaactttatcag
agaggagatactgtgggcacctttcagtttgagtctgaaggcatgcgtcagtggctgcaa
aaactcaagcctaccaacatagaggatcttattgctatgaacgcactctatcgtcctggc
ccaatgcagttcattcctaactttattgaccgtaaacacggtagagaagaggtggaatac
cctcatgaactactggagggcatcttaaaaaatacctatggtattatggtgtaccaggag
cagattatgcaaacggcacaaatactaggtggctactcgcttggtggcgcggatttgctg
cgtagagccatgggtaagaaaaagattgaggagatgaacaagcaaagagtcatcttcgta
aagggtgcctatgaaaaacatggtattgagaaagctaaagctgaagaggtcttctccatc
atggaaaaatttgcgcagtatggttttaaccgttcgcactctgctgcttattccgttgta
gcttatcaaacaggttacctcaaggctaactatccggcagaatacatggctgccgtactt
acacacaatatgaacaactctgataaggtaactgccttcctggatgagtgtaagcgtcag
ggaataagtgtgttagggccagatgtgaacgagagtcgttatttctttggggtaaataaa
gaaggacagatacgttttggcttaggcgctgtaaaaggagctggtgaaaatgcagtaagt
gctattattgaagagcgtgatgaaaaaggcttatatcaagatatttttgagtttaccaaa
agaattaaccttcgccaggtcaataaaaaaacactggaagtgctggcaatggctggggcc
tttgattgttttgatagtgcccatcgcaggcaatatttgtatgcagaagatggtgagatt
agcctgatagaaaaagcatctaaatatgctttaacgcttcagcaggaagagcaggctgcc
cagcaatcgttgttcggaggtagcggggggctagaggttcctgtgccaaaaatacctgac
tgtgaaccatatagcgaaattgaaaagctgaaaatagaaaaagaagttataggtttctac
atctctggtcatccactggaccagtttaaaattgagatagaaaacttttgtacctgtaca
gtagataatattactaactataaaaatcaggatattgccgtagcaggtattgttaccagt
tatcaggaacgtcaaacccgaacgggaaagccttttggtctggtatcaattgaagattat
cagagctcgcttaatctggcttttttcggtgaggattttctcagcaaccgtcaccgttta
tcggtaggggagtttgtgtacgtcaggggcaaagtagaagagcgatataaccaaccagat
gtatgggaacttaggccacaaagtgtacagctacttagcgaaattcgcgagaaaatgact
aaaggcgtacagctcaatattccagtagaagtacttgatgaaagcctgattaccaatttg
gaaagcttacttaaggactatcaaggatcatgttcgcttaaagtgtatttaagagatggt
ctggacaacctgaatgtagacacaatgtctaggaaatataaagtgaatccagtgaatggt
ttttttgaaaagattgaaaaattaaaagacatcacttataaaatagataattag
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