Pseudomonas rhizophila: CRX69_00955
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Entry
CRX69_00955 CDS
T09779
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
prhz
Pseudomonas rhizophila
Pathway
prhz03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
prhz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CRX69_00955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prhz03400
]
CRX69_00955
Enzymes [BR:
prhz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CRX69_00955
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CRX69_00955
DNA repair and recombination proteins [BR:
prhz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CRX69_00955
BRITE hierarchy
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AVU73823
LinkDB
All DBs
Position
206462..207274
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIAPHLEGQRVSRVVVRDRRLRWPIPEDLDVRLSGQRIVLVERRAKYL
LINAEVGTLISHLGMSGNLRLVEVGMPAAKHEHVDIELESGLALRYTDPRRFGAMLWSLD
PLNHELLIRLGPEPLTDLFDGERLFQLSRGRSMAVKPFIMDNAVVVGVGNIYATEALFAA
GIDPRREAGGISRARYLKLAIEIKRILAHAIERGGTTLRDFIGGDGQPGYFQQELFVYGR
GGESCKVCGTGLREIRLGQRASVWCPRCQS
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgccagaactgccggaagtcgaaaccacccgccgcggaattgcgccccacctggaaggg
cagcgtgtcagccgtgtggtcgtacgcgaccggcgcttgcgctggccgatccccgaagac
cttgatgtgcgactgtcgggtcagcggatagtgctggtggagcggcgggccaagtacctg
ctgatcaacgccgaagttggcaccttgatcagccacttgggcatgtccggtaacctgcgc
ttggtggaagtcggcatgcctgccgccaaacatgagcatgtggacatcgaactggaatcc
ggcctggccttgcgctacaccgacccgcgccgcttcggggcgatgctctggagcctcgac
ccgctcaaccacgaattgctgattcgcctcgggccggaaccgttgaccgatctattcgat
ggcgagcgtctgttccagctttcccgaggacgctccatggcggtcaagccgttcatcatg
gataacgcggtggtggtgggggtgggcaatatctatgcgaccgaagcgctgttcgccgcc
gggatcgacccacgccgcgaagccgggggcatttcccgggcgcgctatctgaaactggcg
atcgagatcaaacgcatccttgcccatgccatcgagcgcggcggtacgacgctacgtgat
ttcatcgggggagacggccagccgggttacttccagcaggaactcttcgtgtatggccgg
ggcggcgagtcatgtaaggtctgcggtacggggctgcgggagattcgcctgggccagcgc
gccagcgtctggtgcccacgctgtcagagctga
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