Pseudomonas rhizophila: CRX69_02215
Help
Entry
CRX69_02215 CDS
T09779
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
prhz
Pseudomonas rhizophila
Pathway
prhz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prhz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CRX69_02215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prhz03019
]
CRX69_02215
03016 Transfer RNA biogenesis [BR:
prhz03016
]
CRX69_02215
Enzymes [BR:
prhz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CRX69_02215
Messenger RNA biogenesis [BR:
prhz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CRX69_02215
Transfer RNA biogenesis [BR:
prhz03016
]
Prokaryotic type
tRNA degradation factors
CRX69_02215
BRITE hierarchy
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
TRAM_2
OB_Dis3
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
AVU74058
LinkDB
All DBs
Position
495448..498066
Genome browser
AA seq
872 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILAHLADRGSPASREQLVEEFGLTTEDQLEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVADNPKIQQEV
LVTPGRNANAKVGQFVEVKITHWPTPRFQPQGDVVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLYVAIADVSSYVKLGSALDAEAQVRGNSVYFPERVVPMLPEQLSNGLCSLNPHVDR
LAMVCEMTISKSGEMTDYCFYEAVIHSHARLTYNKVSAMLETPKLAESRKLRGEYTDVVP
HLKELYSLYKVLLAARHVRGAIDFETQETRIIFGSERKIAEIRPTVRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPSPKDYQALLA
SIKDRPDFHLIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKMDTPHVKRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMAEKTISAPIGRKKRGTETSAPAAKTAAEPAAAK
SGRRGPAKEKAVEAYRPSDAAAKNAELRKSREMKQALLAEAKSGGKAASGGKTGRSAPDK
ATGKPSKHRKGPPKAGSAPAKSGGARKPKAKS
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatacgaaaac
cctattcctagccgcgaactgatcctggcgcatctcgccgatcggggttcgcctgctagc
cgcgagcaactggtcgaagagttcggtctgaccaccgaagaccagctcgaagccctgcgc
cgccgtctgcgcgccatggagcgcgatgcgcagttgatctacacccggcgcggcacctat
gcgcccgtggacaagcttgacctgatcctgggccgcatcgccggtcaccgtgacggtttc
ggcttcctgatcccggacgacggcagcgacgacctgttcatgagcccggcgcagatgcgt
ctggtgttcgacggtgaccgggctttggcccgggtttccggcctggaccgccgcggccgc
cgtgaaggcgtgatcgtcgaagtagtgtcccgtgcccacgaaagcatcgtcggccgttac
tttgaagaaggtggcatcggctttgtcgtcgccgacaacccgaagatccagcaggaagtg
ctggtcaccccgggccgcaatgccaacgccaaggtcggtcagttcgtcgaggtgaaaatc
acccactggccaaccccgcgcttccagccccagggcgatgtggtggaagtggtcggcaac
tacatggcgccgggcatggaaatcgatgttgccttgcgcacctacgacattccccacgtc
tggcccgaagcggtcctgaaagaagccgccaagctcaagccggaagtcgaagagaaagac
aaagagaagcgcatcgacctgcgtcacctgccattcgtcaccattgatggcgaagacgcc
cgggacttcgacgacgcggtctactgcgaagccaagcctggcaagctgcgcctgttctcc
ggcggctggaagttgtacgtggcgattgccgatgtttccagctacgtgaaactcggttcg
gcgctggacgccgaagcccaggtacgcggcaactcggtgtacttccccgagcgcgtcgta
ccgatgctgccagagcaactgtccaacggtttgtgctcgctcaatcctcacgtcgatcgc
ctggccatggtttgcgagatgaccatctccaaatccggcgagatgaccgactactgcttc
tacgaggcggtgatccattcccacgcccgcctgacctacaacaaggtcagcgcgatgctg
gaaaccccgaaacttgccgaatcgcgcaagcttcgtggcgaatacaccgatgtcgtgccg
catctcaaagagctgtactcgctctacaaagtgctgctggcggcccgtcacgtgcgtggc
gcgatcgatttcgaaactcaggaaacccggatcatcttcggctccgagcgcaagatcgcc
gagattcgtccgacggtgcgcaacgatgcccacaagctgatcgaggaatgcatgctggcc
gccaacgtcgccactgctgagttcctgaagaagcacgagattcctgcgctgtaccgggtc
cacgatggcccgccgccggagcgcctggaaaaactgcgggccttcctcggtgagctcggc
ctgtccttgcacaaaggcaaggacggtccgtcgcccaaggattaccaggccctgctggcc
agtatcaaggatcgtccggatttccacctgatccagaccgtgatgctgcgctcgttgagc
caggcggtatacagcgccgataaccagggccacttcggcctgaattacgaagcttatacc
cactttacgtcgccgatccgtcgttaccctgacttgctcacgcatcgggcgatccgcagc
gtgatccactcgaagatggacaccccgcacgtcaaacgtgccggtgcgatgaccattccc
aaggcgcgcatctacccctacgacgaggcggccctggaacaactcggcgagcaatgctcg
atgagcgagcgccgtgccgatgaagcgactcgcgacgtagtgaactggctcaagtgcgag
ttcatgaaggatcgcgtgggtgagtcgttcccgggcgtgatcactgccgtgaccggtttt
ggcctgttcgtcgaactgaccgacatctacgtcgaaggcctggtgcacgtcaccgcgctg
ccgggcgattactaccacttcgaccccgtgcatcaccgcttggcgggtgagcgcaccggt
cgcagcttccgtcttggcgatacggtcgaagtgcgggtcatgcgcgttgatctcgacgag
cgcaagatcgacttcgagatggcggaaaaaaccatcagcgcgccgattggccgcaagaag
cgcggcactgaaacttctgcgcctgcggccaagaccgccgccgagcctgctgcggccaag
tccgggcgtcgcggtccggccaaggaaaaggccgtcgaagcctatcgcccaagcgatgcg
gcggcaaaaaacgccgagctgcgcaaaagtcgtgagatgaaacaggcgttgctcgccgaa
gccaagagcggcggtaaagcggcgtctgggggaaagaccggacggtcggcgccggacaag
gcgaccggcaagccgagcaaacaccgtaaaggcccgccgaaagcgggctcggccccagcc
aagagcggcggggcgcgtaaacccaaggccaagtcatga
DBGET
integrated database retrieval system
