Pseudomonas rhizophila: CRX69_06190
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Entry
CRX69_06190 CDS
T09779
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
prhz
Pseudomonas rhizophila
Brite
KEGG Orthology (KO) [BR:
prhz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
prhz03009
]
CRX69_06190
Enzymes [BR:
prhz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
CRX69_06190
Ribosome biogenesis [BR:
prhz03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
CRX69_06190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_25
Methyltransf_31
MTS
Methyltr_RsmB-F
Cons_hypoth95
RrnaAD
PCMT
Methyltransf_23
Methyltransf_11
TRM5-TYW2_MTfase
Methyltransf_15
Motif
Other DBs
NCBI-ProteinID:
AVU74811
LinkDB
All DBs
Position
1363696..1365066
Genome browser
AA seq
456 aa
AA seq
DB search
MAKQERGLRFQPSGGSRAPQVPTGKKQRLTIERLANDGRGIAFLDGRTWFVIGALAGEEV
EARVLGAHGKVVEARAERVFLSSELRRAAPCVHAGRCGGCSVQHLPHNEQLALKQRMLAE
QLSRVAGVQPDEWAAPLSGPELGYRRRARVAVRWDQKAKKLEVGFRAVGSQDIVAIGDCP
VLVQPLQPIMSRLPDMLRRLSKPQALGHVELFAGSSLAVLLRHVSPLSAPDLTILKDFCA
AHQAQLWLQGEGEPQPVEPGQTLGYRLETWDLELAYRPGDFIQVNAGVNEAMVAQALEWL
APRAEERVLDLFCGLGNFALPLAKAVRQVVAVEGVQAMVDRAAANAVSNNLNNTAFFQAD
LSQPLSGAEWVGEGFSAVLLDPPRDGAFEVVRKLASLGARRLVYVSCNPATLARDTVELI
KQGYRLKRAGILDMFPQTAHVEAMALFEASQDGLSD
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcaagaaagaggtctgcgcttccagcccagcggcggaagccgggccccgcag
gtgcccaccggaaagaagcagcgcttgaccatcgaacgcttggccaacgatggccggggc
attgcctttctggacgggcgcacctggttcgtgatcggcgccctggccggcgaagaggtc
gaggcgcgggtgctgggggcccatggcaaagtggtcgaggcccgcgctgagcgagtgttc
ctgtccagtgaactgcgccgtgcggcgccgtgcgtgcatgccggtcgctgcggcggttgc
agcgtccagcatttgccccacaacgaacagctcgccctgaaacagcgcatgctcgccgag
cagttgtcgcgggtcgccggcgtgcagccggatgaatgggctgcgccattgagcgggccg
gaactgggttaccggcgtcgtgcccgcgtggcggtgcgctgggatcagaaggcaaaaaaa
ctcgaagtgggttttcgtgccgtcggcagccaggacatcgtggccatcggcgattgcccg
gtactggtacaacccttgcagccgatcatgagtcgcttgccggacatgctccgtcgcctg
agcaagccccaggcgctggggcatgtggaattgtttgctggctcgtccctggcggtgttg
ctgcggcacgtgtcgccactgtcggcgcctgacctgacgattctcaaggatttctgcgcc
gcccaccaagcccagttgtggctgcagggtgagggcgagccgcaaccggtcgaaccggga
cagacgctgggttatcgccttgagacttgggacctggagctggcttaccggccgggggat
ttcatccaggtcaatgccggggtcaacgaggcgatggtggcccaagccctggagtggctc
gcgccccgagccgaggagcgggtgctggacttgttctgcggcctgggcaactttgccttg
cccctggccaaggcggtgcgccaagtggtggcggtggaaggtgtacaggccatggttgac
cgcgcggcggccaatgccgtcagcaacaatttgaataacactgccttttttcaggccgat
ttatcccagccgttgtcgggtgccgagtgggtcggcgaaggcttttctgcggtactcttg
gacccaccccgcgacggtgctttcgaggtggtgcgcaaactggcatccctgggcgccaga
cggttggtatatgtatcgtgcaacccggcaactttggcccgggacacggtcgaattgatc
aagcagggctaccggttaaaacgtgccgggattctcgatatgtttcctcagacggcacat
gtcgaggccatggcgttatttgaagcgagccaggatggcttgtccgactga
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