Pseudomonas rhizophila: CRX69_12120
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Entry
CRX69_12120 CDS
T09779
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
prhz
Pseudomonas rhizophila
Brite
KEGG Orthology (KO) [BR:
prhz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prhz03019
]
CRX69_12120 (hrpA)
Enzymes [BR:
prhz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CRX69_12120 (hrpA)
Messenger RNA biogenesis [BR:
prhz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CRX69_12120 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_19
AAA_25
AAA_22
nSTAND3
NACHT
T2SSE
nSTAND_NTPase5
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AVU78734
UniProt:
A0ABM6UMJ0
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All DBs
Position
2629849..2633760
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDQAPAIDKLLKNLDHAMLADRHRLRRQLLELRKKPDEAKLAQWVTRMQASCDQVLARK
ASLPVIRYDDSLPIAAKRDEIKDALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDANTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVDTWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDV
LVFLPGEREIRDAAEMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYS
EEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDPDSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDMQLSLNKEPADFPKLHKAVLSGLLSQIGQKTEDGDYLGARQRRFWVHPSSG
LGKKRPQWLMTAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAY
EQITLFGLIVVGRRPVHYGPVDPVVSRELFIREALVRGEIQSRAKCLSANTQLLEQLDEL
EAKARRRDILADEETLFAFYDARLPAEIHQTATFDSWYRINSQKDPQLLIMREEDVLARE
ASEVTAAYYPDTLRVGELTLPLSYHFEPNHPRDGVTLRVPAPLLPMLPPERLEWLVPGMI
EAKCIALVRNLPKALRKNFVPVPDFVKAALQRITFAEGSLPQSLGRELLRMTGARVSDEA
WAEAAQQVESHLRMNLEIVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQAPVE
AKIFAPVAEKTQQKIAGLSMTVYPALVEEGGVVKEGRFPTPAEAEFQHRRALQRLLMQQL
AESAKFLRGKLPGLTELGLLYRELGRIDSLVEDILLVSLDSCVLEGEASLPRDGAALASL
AERKRGGWTEHAERLAKLTLEILKLWHGLQKRFKGKIDLAQAVALNDIKQQLSHLVYPGF
VRETPHQWLKELPRYLKAIEQRLEKLGSQVQKDRVWSGELSNLWAQYQTRASKHAQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWGQVEP
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccaagcccccgctatcgacaagctgctgaaaaacctcgaccacgccatgctc
gccgaccgtcaccggttgcggcgtcagttgctcgagctgcgcaagaaacccgacgaggcc
aagctggcccagtgggtgacgcgcatgcaggcgtcgtgtgatcaggtgttggcgcgcaag
gccagcctgccggtcatccgttacgacgacagcttgccgatcgccgccaagcgcgacgaa
atcaaggacgcgctgctcaagcaccaggtgctgatcatcgctggcgaaaccggctcgggc
aaaaccacgcaactgccgaaaatctgcctggaaatcggtcgcggccagcacggtttgatc
ggccatacccagccgcggcggatcgccgcgcgtagcgtggcgagccgggtcgccgaagag
ctggccacgccgctgggggcgctggtcggttaccaggtgcggttcgaagaccagagcgac
gccaacactctgatcaagttgatgaccgacggcatcctgctggccgagacccagaacgac
cgttacctggaacgctacgacacgatcatcgtcgacgaagcccacgagcgcagcctgaac
atcgattttttgctcggctacctcaagaccctgctgccgcgtcgcccggaccttaaagtc
atcatcacctcggcgaccatcgacctggagcgtttttccaagcacttcgatgacgcgccg
atcgtggaagtctcgggtcgcaccttcccggtggacacctggtatcgcccgttgaccctg
gagcaggacgaggagggcaaccgcgtcgaggatgacttgaccgtcgaccaggcgatcctc
gccaccctcgatgaaatcgccgcctatgagcgtagcgaacgccgcagccccggtgatgtg
ctggtgttcctgccgggcgagcgggagattcgcgacgcggcggaaatgctgcgcaaggcc
cagctcaaacacaccgaaatcctgccgttgtatgcgcggctgtcgccagccgaacagcag
cggatcttccagtcccaccctggccgtcgcgtggtgctggcgaccaacgtcgctgaaacg
tcgctgaccgtgccgggcatccgctacgtgattgacagcggcaccgcgcgcatcagtcgc
tacagctatcgcgccaaggtccagcgcctgcccatcgaagccatttcccaggccagcgcc
aatcagcgcaagggccgctgcgggcgggtcgagccggggatctgcgtgcggttgtacagc
gaggaggatttcctcggccggccggaattcaccgaccccgagatcctgcgcaccaacctg
gcggcggtcatcctgcagatgttgcacctgcgcctgggggagattaccgatttcccgttc
atcgaaccgccggacggcaaggccatcagcgacggcttcaacttgctgcaagagctgtcg
gcggtggaccgcaacagtcagttgaccccgctgggccgccagttggcgcgcttgccggtg
gacccgcgcatgggccgtatgctgctggaagcggcgaaactgggcagcttgcaggaagtg
ctgatcgtcgccagcgccatgtcgatccaggacccgcgcgagcgtccaccggagcgtcag
caggcggctgaccaggcccacgcccagtggaaagaccccgactcggacttcgccgggctg
gtcaatctgtggcgcggtttcgaagagcagcgccaggccctgaccgccagcccgctgcgc
aactggtgccgcaagaatttcctcaactacctgcgcctgcgcgagtggcgcgattcccat
cgccagttgagcttgatctgccgcgacatgcagttgagcctcaataaagagccggctgat
ttcccgaaactgcacaaggcggtgctttccggcctgctgagccagatcggtcagaaaacc
gaagacggcgactacctcggtgcccgtcaacgacggttctgggttcacccctcgtcaggc
ttgggcaagaagcgtccgcaatggctgatgaccgccgaactggtggaaaccaccaagctg
tacgcgcgcatggtggccaagatcgaaccggactggatcgaaccgctggccggccacctg
atcaagaaaaaccacttcgaaccccattgggagaaaaagcgcgggcaggtggtggcgtat
gagcagatcaccctgttcgggctgatcgtggtcggtcgccggccggtgcattacgggccg
gtggacccggtggtgtcgcgggaactgttcatccgcgaggcgctggtgcgcggcgagatc
cagtcccgggccaagtgcctgagtgccaatacccaactgctggagcaactcgacgaactg
gaagccaaggcccgccgtcgcgacatcctggcggacgaggaaaccctgttcgccttctac
gatgcgcgcttgccggccgagatccaccagaccgcgaccttcgacagctggtaccggatc
aacagccagaaagacccgcaactgctgatcatgcgcgaagaagacgtgctggcccgcgag
gccagtgaagtcactgccgcgtactaccccgacacgttgcgcgtcggtgagctgaccttg
ccgctgagctaccattttgaacccaaccatccccgcgacggcgtgaccttgcgcgtgccg
gcaccgctgctgcccatgttgccgccggagcgtctggaatggctggtgcccgggatgatc
gaagccaagtgcatcgccctggtgcgcaacctgcccaaggccctgcgcaaaaacttcgtg
cccgtgccggatttcgtcaaggccgcgctgcaacgcatcacctttgctgagggttcgttg
ccgcaatccctgggccgcgaactgctgcgcatgaccggcgcgcgggtcagcgacgaagcc
tgggcggaagctgcgcagcaggtggaaagccatctgcgcatgaatctggaaatcgtcgac
ggccagggcaagtttctcggcgaaggccgtgacctggccgagttgacggcgcgctttgcc
gaagccagccaggccgccttggccgtgccgcagacggcgaaaagccaggcgccggtggaa
gcgaaaatcttcgccccggtggccgagaaaacccaacagaagattgccgggctgtcgatg
acggtgtacccggcgctggtggaagagggcggtgtggtcaaggaaggccgtttcccgacc
ccggctgaagccgagttccagcaccgtcgcgccttgcagcggttgctgatgcagcaattg
gcagaatcggccaagttcctgcgcggcaaactgcccgggttgacggaacttggcctgctg
taccgcgaactgggacgcatcgacagcctggtggaagacatcctgctggtcagtctcgac
agctgcgtgctggaaggcgaggcgagcctgccccgtgatggcgccgcactagcatccctg
gccgagcgcaaacgcggcggctggaccgaacacgccgaacgcctggcgaagctgaccctg
gagatcctcaaactctggcacggcctgcaaaaacgcttcaagggcaagatcgacctggcc
caggccgtggcgctgaacgacatcaagcagcaactcagccatctggtgtacccgggattt
gtgcgcgaaaccccgcatcagtggctcaaggagctgccacgctacctcaaggccatcgag
cagcgcttggagaaactcggcagccaggtgcagaaggaccgggtctggagcggtgaactg
tcgaacctctgggcccagtaccagacccgcgccagcaaacacgcccaggaaggcaagcgc
gacccgcaactggagctgtaccgctggtggctggaggaataccgggtgtcgctgtttgcc
cagcaactgggcaccaaggtgccgatttcggataagcgcttgagcaagcagtgggggcag
gtggagccctga
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