Pseudomonas rhizophila: CRX69_24580
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Entry
CRX69_24580 CDS
T09779
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
prhz
Pseudomonas rhizophila
Pathway
prhz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prhz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CRX69_24580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prhz03019
]
CRX69_24580
Enzymes [BR:
prhz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CRX69_24580
Messenger RNA biogenesis [BR:
prhz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CRX69_24580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AVU78194
LinkDB
All DBs
Position
5410851..5412716
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AA seq
621 aa
AA seq
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MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKIYARDLKFVSACIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASTIEAEKPEVRERPDVRNPRNARGPRGDGPNGGGGGGG
GRKDKGKDKGKEKSASTSRGERPAREHKPREGTPAREQQRPAPRAAADRAPDEFLDDDID
NFGNRVDYVPQQKPAQGRGRRPGAPAQGAAGAGAPRGQSQGRQNGPRNSNGSSTGTPPAK
RSGPRNGAPRDGQARREDSRPRRPARDEQPRQEPAVQAPRGNQPKIMHKESKIDRFPTPE
QLDQLPSRPRGEKPALLTRNR
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggctgccggc
tacacccagcctaccccggtgcaacagcgggccatccccgccgtgttgcaaggtcgcgat
ctgatggtcgcggcgcagacaggcactggtaaaaccggtggttttgccctccctatcctg
gagcggcttttccccaacggtcacccagacaaatcccagcgtcacggcccgcgccaaccg
cgcgtcctggtcctgacccctacccgcgaactggcggcccaggtacacgagagcttcaag
atctatgctcgcgacctgaaattcgtcagtgcctgcattttcggcggcgttggcatgaac
cctcaggtccaggccatggcccgtggcgtcgacgtgctggtggcctgtccgggtcgtttg
ctcgacctggccggccagggcagcgtcgatctgtcccacgtggaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggctttgtccatgacgtgaagaaagtgctggcccgc
ctgcccgccaagcgtcagaacctgctgttctcggcgacgttctccaaggacatcaccgac
ctggccggcaagctgctacacaacccggaacgcattgaagtcacaccgccaaacaccacg
gtcgagcgcatcgaacaacgtgtgttccgcttggcggccagccacaagcgtgccctgttg
gcgcacctgattaccgccggcgcctgggaacaggtcctggtgttcacccgcaccaagcac
ggcgccaaccgtctggccgagtacctggacaaacatggcctgccggccgtggcgatccac
ggtaacaagagccagaacgcccgcaccaaggccttggccgacttcaaggccggcgaagtg
cgcattctggttgccaccgacatcgccgctcgcggtctggacatcgaccagttgccccac
gtggtcaacttcgagttgccgaacgtcgatgaagactacgtacaccgtatcggtcgtact
ggccgggccggccgttcgggcgaagcgatctcgctggtcgcgccggacgaagagaaactg
ctcaaaagcatcgagcgcatgaccaagcagaaaatcgccgatggcgacctgatgggcttc
gatgccagcaccatcgaggccgagaagcctgaagtgcgtgaacgtccggacgtgcgcaac
ccacgcaatgcccgtggccctcgcggtgacggtccaaatggcggcggcggtggtggcggc
ggccgtaaagacaaaggcaaggacaagggcaaggaaaaatcggccagcaccagtcgcggc
gaacgcccggctcgcgagcacaagcctcgcgaaggtaccccggcccgtgaacagcagcgc
ccggcaccacgtgccgctgccgatcgcgcaccggacgagttcctggacgacgatatcgat
aacttcggcaaccgcgtcgattacgtgccgcagcagaaacccgcccagggtcgcggacgt
cgtcctggcgcaccggcacagggcgcggcgggcgcaggtgctcctcgtggccaatcccag
gggcgtcagaacggcccgcgcaacagcaacggctcgtccaccggcaccccgccggccaag
cgcagcggcccgcgcaacggcgcacctcgtgacggccaggcccgccgcgaagactcccgc
cctcgccgcccggcacgtgacgagcagcctcgtcaggaacctgccgtgcaagcccctcgt
ggtaaccagccgaagatcatgcacaaggagtcgaagatcgatcgattcccgacgcctgaa
cagctggatcaactgccaagccgtccacggggcgagaagccggcactgctgacccgcaat
cgctga
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