Paenibacillus riograndensis: PRIO_0043
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Entry
PRIO_0043 CDS
T03849
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pri
Paenibacillus riograndensis
Pathway
pri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PRIO_0043 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pri03400
]
PRIO_0043 (mfd)
Enzymes [BR:
pri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PRIO_0043 (mfd)
DNA repair and recombination proteins [BR:
pri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PRIO_0043 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
RecG_dom3_C
SecA_DEAD
AAA_16
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CQR51122
UniProt:
A0A0E4H639
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All DBs
Position
I:41402..44926
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AA seq
1174 aa
AA seq
DB search
MLQGIIEAFSKDPDFQSVTRGVAAGMKEQLISGLSGSARQIMLAALHEETGRPLLIVTHN
MFSAQKMAEDLQEALSPDRVLLYPANELVAAEAAVSSPETLAQRIDVLTKCAQGFRGVVV
VPYSGVRRLLPSPHVMAGAELTLSQDGTLVLDDFLMSMIEMGYERVERVENRGELSVRGG
IIDFFPMTSPLAYRVELFDDEVDSIRTFDPQDQRSIDKVRSVKITPAKEIIADQIRLDSA
SSEAAAMLERQLEKMTDRQAKLRLREEMGRELEMLREGTYFPEIYKYISLLYPERTHLYD
YMAQDTLLVLDEPARLLETAKQLERDESEWNLHLLQNGKTLPDLQLSVESDAVMYQRPFQ
SLFMSIFLRQVPHIQPQNILGFISRGMQDFHGQMNVLKSEMERWHKSGVKVIMLANGEER
MERVRRVLYDYGIEEPTILQGNLGSGFELPSIHLAVITEGEMFSQKQRKARKVSKGIDNA
ERIKSYTELKIGDYVVHQNHGIGKYMGIGTLEVSGIHRDYMHILYAGGDKLSVPIDQIDL
IQKYVGSEDKEPKVYKLGGNEWTRVTSKVRSSVQDIADDLIKLYAERQSALGYGFEKDTQ
EQREFEEMFPYEETRDQLRAIEEIKKDMEQNRPMDRLLCGDVGYGKTEVAIRAAFKSAIE
GKQVAVLVPTTILAQQHYETFRERFANYPLNIQVLSRFRSRKEQNETIKGVRQGTVDVVI
GTHRLLSQDMVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSML
GVRDLSVIETPPENRFPVQTYVVEHSQTLIREAVERELARGGQVYYLYNRVQGIQEMAAQ
ISMLVPEARVGIGHGQMSESELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDA
DKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMR
DLSIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIRKRKVSVLGEEDTSLKQGNTVIDLS
IDAYLPSEYIYDSIQKIEIYKKVAAVATLEDAAELEDELLDRFGELPEAVVNLLTVARLK
VYGKLYGMESMVRRGDEVSLNFHEGSTGAFDTAKLAKVGNSFERRVQFDRDAKATIRVKS
KNLEDKELLDLLEQFLAAAKQSLKSKGELHNVIK
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaaggtattatagaagcattttccaaagatcccgattttcagtccgttacccgc
ggtgttgctgcaggcatgaaggagcagctcatctcgggcttgtccggttcggccaggcaa
attatgctggcggcgcttcatgaagaaacggggcgtccgctgcttatagtgactcataat
atgttctcggcccagaagatggccgaggatttacaggaagcgctttccccggaccgcgtg
ctgctctatcccgctaacgagctggtagccgctgaagcggccgtctccagccctgagaca
ctggctcagcggattgatgtgctgaccaagtgcgcccaaggcttccgtggcgtagtcgta
gttccctactccggcgtccgccgcctgcttccttccccgcatgtgatggctggggctgaa
ctgaccctttcgcaggatggaacgctcgtgcttgatgatttcctgatgtctatgatcgaa
atgggctacgaacgggttgaacgggtagagaaccgcggcgaactcagcgtccggggcggt
attattgatttcttccccatgacttctcccctggcctaccgggtggagctgtttgatgat
gaggtggactcgatccgtacctttgatccgcaggaccagcgctccatcgacaaggtgcgc
agcgtgaagatcacacctgccaaagaaattattgccgatcagattcgcctggattctgct
tcttctgaggctgcggccatgctggagcggcagctcgaaaagatgaccgaccgccaggcc
aagctgcgcttgcgcgaggaaatgggacgcgagctggaaatgctccgcgagggcacttat
tttccggaaatctataaatatatcagccttctatatcctgaacgtacccatctgtacgat
tacatggcacaggatacgcttctggtactcgatgaaccggcccggctgctggaaaccgcg
aagcagcttgagcgggatgagtcggaatggaacctgcatctgctgcaaaacggaaaaaca
ctgcctgacctgcagctttctgtcgagagcgatgccgttatgtatcagcggccgttccag
agcctgttcatgtcgattttcctgcgccaggttccgcatatccagccgcagaatattctg
ggcttcatcagccggggcatgcaggacttccatggccagatgaatgtgctgaagtcggag
atggagcgctggcacaaatcaggcgtgaaggtcattatgctggctaacggcgaagaacgg
atggagcgggtccgcagggttctgtatgattacgggattgaggagcctacgatcctgcaa
ggaaatctgggctccggatttgaactgccctccatacatcttgcggtcattactgaaggg
gaaatgttctcccagaagcagcgcaaggcacgcaaggtatccaaaggcatcgataatgct
gaacggatcaaaagctacactgagctgaagatcggtgattatgtcgttcaccagaatcac
gggatcggcaaatatatggggatcgggacgctggaggtcagcggaatccaccgtgattat
atgcatattctgtatgccggaggcgataagctttccgtacccatcgaccagattgatctg
attcaaaaatatgtaggctcggaagacaaggagccgaaggtctataagcttggcggcaac
gaatggacaagggtcaccagcaaggtgcgttcatccgtgcaggatatcgccgacgatctg
atcaagctttatgccgagcgccagagcgcactgggttatggttttgagaaggatacccag
gagcagcgggaattcgaagagatgtttccctatgaggagacgcgcgatcagctgcgggcg
attgaggaaatcaaaaaggacatggagcagaaccggccgatggaccgcctgctgtgcggt
gacgttggttacggcaagactgaggtggcgatccgtgccgcttttaaatcggcgatagaa
ggcaagcaggttgcggtgctggtgccaacgaccattctggcccagcagcactatgagacc
ttccgcgagcgttttgccaattatccgcttaacatccaggtgcttagccgttttcgcagc
cgcaaggagcaaaacgagacgattaaaggggtccgccaaggcacagtagatgtggttatc
ggcacacaccggctgctgtctcaagatatggtctttaaggacttgggacttctgatcgtg
gatgaggagcagcggtttggtgtcacccataaggagaaacttaagaaactgaagaccaat
gtagatgtgctgacgcttacggccacccctattccccgtaccctgcatatgtcaatgctc
ggtgtgcgggacttgtccgttattgagacgccgccggagaaccgttttcccgtgcagacg
tatgtggtggaacacagccagacgctcatccgggaggccgtggaacgcgaactggcccgg
ggtggacaggtctattatctctataaccgtgtccagggaatccaggaaatggccgcgcag
atctccatgcttgttccggaagcccgggtcggcatcggccatggccaaatgtcggagtca
gaactggagaagaccatccttgactttctggacggggagtacgacgtgctggtcagcacg
agtatcatcgagaccggggtggatattcctaacgtcaatactctgattgtccatgatgcc
gacaaaatggggttgtcccagctgtaccagctgcgcggacgggtaggccgctccaaccgg
attgcctatgcctactttacgtaccagcgcgacaaggtgcttactgaggtagccgagaag
cgcctgcagtcgattaaggaattcacagagctgggttcaggcttcaaaatcgccatgcgc
gacctttccattcgcggagcgggcaatctgcttggcgccgaacagcatgggttcattgcc
tctgtcgggttcgacctctattcgcaaatgcttgcggaggaaatccgcaaacgcaaagtc
agtgtgctcggcgaggaagacacttcccttaagcaagggaatacggttattgatttgtcg
attgatgcttatctgccatccgaatatatttacgacagcattcaaaaaattgagatttat
aagaaggttgccgctgtggctacgcttgaggatgccgctgagctggaagacgaactgctg
gaccgcttcggagagctgccggaagccgtggtcaatctgttgaccgttgcccgcctgaag
gtgtatggcaagctttacggcatggaatcaatggtccggcggggggatgaagtttcgctc
aacttccatgaaggcagcaccggtgcttttgatacggcgaagcttgctaaagttggaaat
agctttgaaagacgtgtacaatttgatagggacgccaaagcaaccatccgcgtgaaatcg
aagaacctggaggataaggagctgcttgacttgctggaacagttcctggcggcggccaaa
cagtctttaaaatcgaagggagaactacacaatgtcattaaataa
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integrated database retrieval system
