Paenibacillus riograndensis: PRIO_2999
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Entry
PRIO_2999 CDS
T03849
Symbol
helD
Name
(GenBank) Helicase IV
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pri
Paenibacillus riograndensis
Pathway
pri03420
Nucleotide excision repair
pri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PRIO_2999 (helD)
03430 Mismatch repair
PRIO_2999 (helD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pri03400
]
PRIO_2999 (helD)
Enzymes [BR:
pri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PRIO_2999 (helD)
DNA repair and recombination proteins [BR:
pri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PRIO_2999 (helD)
MMR (mismatch excision repair)
Other MMR factors
PRIO_2999 (helD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C_2
UvrD_C
Viral_helicase1
AAA_16
PhoH
AAA_30
SLFN-g3_helicase
DEAD
nSTAND3
NACHT
Motif
Other DBs
NCBI-ProteinID:
CQR55402
UniProt:
A0A0E4H9V1
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All DBs
Position
I:3566527..3568884
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AA seq
785 aa
AA seq
DB search
MEKHDSEWEEEQNRVNGITKLLSAHIRRLSDELGLHRSDVVDMRKDFWEEVTVNFSSPDD
LGETSTSLRQQAQILNERERHHLQSSKALKKYRKLVVSPYFGRIDFKETADAEAERIYLG
IGSLMEDNGSFLIYDWRAPISSLYYDGAPGPAAYETPGGLVSGTMELKRQFVIDNGTIEV
MFDTGVTIGDELLQQVLSHSADDRMKSIVATIQKEQNAIIRNDRSRMLVVQGAAGSGKTS
AALQRVAYLLYKYREVLQADQMLLFSPNPLFNSYVSTVLPELGEENMQQTTFQMYLEHRL
GQEFELEDVFSQTESLLNAPEGPEAATRRAGITYKSSVAFLDVIRRYVNLLEHEGMLFKP
LVFQGRAVVSKEEMQQKFYSFDPGIKLANRIDLMTGWLLKKIAAYSVEEREAQWVEDQIE
LLDSSDYQRAYNMLRRKGGGRNDSFDDFDMEKTVLARYIVSQRLKPLRGWTKRGRFVDVK
GLYSLLFADRELMERLGNGRELPEAWDAICRQTVASLSRNELAYEDATPFLYLKELSQGF
RTNTQIRHVIVDEVQDYSPFQLEFMRRLFPRAKMTVLGDLNQAIYAQGEVLGDLGGLVSV
YGRENTEVISLTRSYRSTYEIVEFTRSMIPGGEKIVPFNRRGESPLLTVVDNEEGLLGSI
EQDVLNLHSMGYHYVAVICKTAEESARVHAKLQNRLPVRLVTKDTPNFQKGTLVLPAYLA
KGVEFDAVIIYDGSEAKYGRESERKLFYTACTRAMHLLHIYSLGQPNHFLPAEVRESAAA
GVMQR
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggagaagcatgatagcgagtgggaagaagagcagaatcgggtaaacggaattacaaag
ctgctgtcagcccatatcagacggctatccgatgagcttggtcttcatcgcagtgatgtt
gtggatatgcgcaaagacttctgggaagaggttacagtgaacttcagcagcccggatgat
cttggagaaacctcgacaagcctgcggcagcaggcgcaaattctgaatgaacgggaacgc
catcatctgcagtcaagcaaagcgctcaaaaaatatagaaaacttgtcgtatcgccttat
tttggacggattgattttaaagagacagcggatgcagaagcagaacggatttatctgggc
atcggctcgctgatggaggataacggctcgttcctgatatacgactggcgcgctcccatc
tcaagcctgtattatgacggggctccgggtccggcagcctatgaaacaccaggcgggctt
gtctccggcaccatggagctgaaacgccaattcgtgatcgataacggcacgattgaggtc
atgttcgatacaggtgtcaccatcggcgacgaactgcttcagcaggtactcagccacagt
gcggacgaccggatgaaaagtattgttgcgacgatccaaaaggagcagaatgccattatc
cgcaatgaccggagccggatgctggtcgtgcagggtgcagcaggcagcgggaaaacctct
gccgcgctgcagcgcgtcgcttatctgctctacaaataccgcgaggtgctgcaggcggac
caaatgctgctgttttcgccgaatccgctttttaacagctatgtatccactgtactgccg
gagctgggtgaagaaaatatgcagcagacgacgttccagatgtatcttgagcaccgtctg
ggccaggagtttgagctggaggatgttttcagccagacagaaagcctgctgaatgccccg
gaagggcctgaggcggctacgcggagagcaggaattacttacaagtcatctgtggctttt
ttggatgtgatccggcgttacgtcaatctgctggagcatgaggggatgctgtttaaaccg
cttgtatttcaaggccgggcagtcgtcagtaaagaagaaatgcagcaaaaattctacagc
tttgatcccggaattaaactggcgaaccggattgatctgatgacgggctggctgctcaaa
aaaatcgctgcatacagtgtggaagagcgggaagcgcagtgggtggaggaccagattgag
ctgctggattccagtgactatcaacgggcatacaatatgctccgccgcaagggcgggggc
cggaatgacagctttgatgactttgatatggagaaaacggtgctggcccggtatattgtc
agccagcgtctgaagccgctgcgcggctggaccaaacggggaaggttcgtggatgtgaag
gggctgtacagcctgctttttgctgaccgtgagttaatggagcgcctgggcaacggccgg
gagctgccggaagcctgggacgctatctgccgccagacggtggcgtctttgagccggaac
gagcttgcctatgaagatgccacaccttttctctatctgaaggaactgagccagggcttc
cgcaccaatacgcaaatccgtcatgtgatcgtcgatgaggtgcaggattattccccgttc
cagctagaattcatgcgccgcctgtttccccgggccaaaatgacggtgcttggtgatctc
aatcaggcgatttatgcccagggtgaggtgcttggtgatctgggcgggctggtcagcgtc
tacggccgggagaatacagaggtcatctccttgacccgcagctatcgctccacctatgag
attgttgaatttacgcgttcgatgattcccggcggggaaaagatcgtccccttcaaccgg
cggggagaatcaccgctgctgacggttgtggacaacgaggagggtctgcttggttcaatt
gagcaggatgtgctgaatcttcactccatgggctatcattacgtggcggtaatctgcaaa
acggcagaggagagtgcacgggtccatgccaagctgcagaacaggcttccggtcaggctg
gttacgaaggatacgcccaattttcaaaaagggaccctggtgctgcccgcatatttggcc
aagggcgtggagtttgatgccgtcatcatttatgacggctccgaggctaaatatggccgg
gaaagcgaacgcaagctgttctataccgcttgcacccgggctatgcatctgctgcatatt
tacagcctgggccagccgaatcattttctgcccgccgaagtccgcgagtcggcagctgcc
ggagttatgcagcgttga
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