Paenibacillus riograndensis: PRIO_4084
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Entry
PRIO_4084 CDS
T03849
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pri
Paenibacillus riograndensis
Brite
KEGG Orthology (KO) [BR:
pri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pri03032
]
PRIO_4084 (topA)
03400 DNA repair and recombination proteins [BR:
pri03400
]
PRIO_4084 (topA)
Enzymes [BR:
pri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PRIO_4084 (topA)
DNA replication proteins [BR:
pri03032
]
Prokaryotic type
DNA Topoisomerases
PRIO_4084 (topA)
DNA repair and recombination proteins [BR:
pri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PRIO_4084 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_RPB9
Toprim_3
Lar_restr_allev
DinB
Motif
Other DBs
NCBI-ProteinID:
CQR56487
UniProt:
A0A0E4HC52
LinkDB
All DBs
Position
I:complement(4745205..4747301)
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AA seq
698 aa
AA seq
DB search
MADALVIVESPAKAKTIGKYLGSKYIVKASMGHIRDLPKSQIGVEVENDFSPKYITIRGK
GSILKELKDASKKVKKVYLAADPDREGEAIAWHLAHALDLDNSEECRVVFNEITKQAVKD
AFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIIMDREN
EISAFVPTEYWSITAKLGIRDALFEAKFHKLNGEKKELGNENDVKEVLDAIKDAAFKVSE
VKEKERQRHPSAPFTTSSLQQEAARKLGFRAAKTMSVAQQLYEGVELGKEGTVGLITYMR
TDSTRLSATAQEEAKELILAKYGEKFVPESPRQYSKKAAGAQDAHEAIRPTSALREPEMV
KEFMSRDQFRLYKLIWERFVSSQMSSAVLDTLSVDITAGTAVFRAVGSKVSFPGFMKVYV
EGNDDGTTDEEKFLPPLQAGDDLKKQEIEPKQHFTQPPPRYTEARLVKTLEELGIGRPST
YAPTLETIQKRGYVAIEEKKFMPTELGELIIEQMEQFFPEILDVEFTAHMEDDLDHVEDG
EEDWVKVLAEFYTSFEKRLVFAEEEMKEIEIEDEVSDEMCEKCGKPMVYKLGRFGKFLAC
SGFPDCRNTKPIVKDIGVSCPKCHEGKVVERRSKKGRVFYGCDQYPGCDFVSWDRPSVKP
CPVCGSWMIEKRSKQGTKLQCTSCDHTEAVLEGEELAE
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcgctggttattgtcgaatcgccggcaaaagcgaagacaattggcaaatat
ttaggcagtaaatatatcgtaaaggcttcaatgggacatatcagagatttgccgaaaagt
cagatcggggtagaagtagagaatgatttcagtcccaagtatattacgatccgcggcaag
ggctctattctgaaagagctcaaagatgccagcaaaaaagtgaaaaaagtctatctggcg
gctgacccggaccgcgaaggtgaagcgattgcctggcatctggcacatgcgctggatctg
gacaactcagaggaatgccgggtcgtttttaatgagatcacgaagcaggcagtgaaggat
gccttcaagaccccgcggaaaattaatatggatctggtgaacgcgcagcaggcccgccgg
atactggatcgtctggtcggctacaagatcagtccgctattatggaagaaagtcaaaaaa
ggtttgtcagccggccgtgtgcagtctgttgccgtgaagattattatggaccgcgagaat
gaaatttcggcttttgttccaacggaatattggagcattactgcaaagctaggcatccgg
gatgcactgttcgaagccaagttccacaagctcaatggggagaagaaagagctcggaaac
gaaaatgatgtaaaagaagtgctggatgccattaaagatgctgcgttcaaggtgagtgaa
gtcaaagagaaggagaggcagcgccatccttcggctcccttcacaaccagctccctgcag
caggaggcagcacgcaagctgggcttccgtgccgccaaaaccatgtctgtcgcacagcag
ctctatgagggcgttgaactgggcaaagagggaaccgtgggtttgatcacttatatgcgt
actgactccacccggctgtccgcgactgcgcaggaagaagccaaggaactgattctggcg
aaatacggtgagaagtttgtgcccgagtcgccccgccagtattccaagaaggccgccgga
gcccaggatgcgcatgaagccatccgtcctacctccgcacttcgtgaacctgagatggtc
aaagaattcatgagccgtgaccaattccggctgtataagctgatctgggaacggttcgta
tccagccagatgtcttcagcagttcttgatacactctcggtagatatcactgcgggcaca
gctgtcttcagagccgtgggctccaaggtctcttttccgggttttatgaaggtttatgtt
gaaggcaatgatgacggtacaacggatgaagaaaagttcctgccgccgctccaggcgggc
gatgacctgaagaagcaggaaattgagccgaagcagcatttcacgcagccgcctccgcgc
tatactgaggcacgtctggtgaagacgctggaagagctcggcataggccgtccaagtacg
tatgccccgacactcgaaaccatccagaaacgcgggtatgtggccattgaagaaaagaaa
tttatgccgaccgagcttggagagctgatcattgagcagatggagcagtttttcccggag
attctggatgtggaatttacagcgcatatggaagatgatctggaccatgtggaggatggc
gaagaagattgggtgaaagttttagctgaattttacacgtcctttgagaagcggctggtc
tttgctgaagaagaaatgaaagaaatcgaaattgaagatgaagtttcggatgaaatgtgc
gaaaaatgcggcaagcctatggtatataagctgggacggttcggtaaattcctggcatgc
tccggatttcccgattgccggaataccaagccgattgtcaaggatattggcgtgagctgc
ccgaaatgccatgaaggcaaggttgtggagcgccgcagcaagaaaggccgtgttttttac
ggatgtgaccagtatcccggctgtgattttgtatcatgggacagaccatccgtcaaacca
tgtccggtctgcggctcctggatgatagagaagcgcagcaagcagggaacgaagctgcag
tgcacctcttgcgatcacacggaggcagtgcttgagggcgaagaactggcagaataa
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