Paenibacillus riograndensis: PRIO_4955
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Entry
PRIO_4955 CDS
T03849
Name
(GenBank) hypothetical protein
KO
K03092
RNA polymerase sigma-54 factor
Organism
pri
Paenibacillus riograndensis
Pathway
pri02020
Two-component system
pri02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pri00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PRIO_4955
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PRIO_4955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pri03021
]
PRIO_4955
Transcription machinery [BR:
pri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PRIO_4955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
HTH_Crp_2
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
CQR57357
UniProt:
A0A0E4CYF0
LinkDB
All DBs
Position
I:complement(5746303..5747577)
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AA seq
424 aa
AA seq
DB search
MDTKQKMGLSPGLRQSVEVLQMDSQELDQYVHRLSEENPLIEVQYSWGGSSIKGSKSTQH
LLQYAAGPRHSLQDQLRSQLALLPLTKSERPLAAYLIGCLDDNGYFAEQVEVVAAGLGVG
CQVIEAGLRRVQSLEPYGVGARNLQECLLLQLEHSGRLTPLLRLLIEHHLEQLGGNQLVR
VAKELNTSLKRVQEAYSTIKSLNPRPAYALDNGESTVYIVPDVYVMQKNGAHEAAVHPLS
CPQITLAESYQRLLSLSGDEETRRYLQEKHEQASWIMRCLEERKKTLCRVAGAILKLQRP
FFERGQDYLVPLTLGRIAEELELHESTVSRAVRGKYMQCVWGTFELKYFFPSGITGEDSD
WTPDALKRVIRELIEGEDKQAAYSDRRIAELLLEQGAVISRRTVAKYRESMRIASAPGRR
EYPV
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggataccaagcaaaaaatgggtttgtctcccgggctgcggcaatccgtcgaggtgctg
caaatggattcgcaagagctggaccaatatgtacaccggttgtcagaggaaaatccgttg
attgaggtgcagtattcctggggcggcagcagcattaagggctctaaaagcacgcagcat
ttgctgcagtatgcggcaggtccccggcacagtctgcaggatcagctgcggtcgcaattg
gcgctgctgccgctgaccaagagtgaacggcctcttgcggcctatctgattggctgcttg
gatgacaacgggtattttgcggaacaggtggaggtcgttgcagccggactgggagtcggc
tgtcaggttatcgaagccggactgagacgtgtccagtccctggagccttacggagtcggc
gccaggaatttgcaggaatgtctgctgctgcagctggagcactccggcagattgacgcct
ttattacggctgctgatcgaacaccatcttgagcagttgggcggcaatcagctggtccgt
gtcgccaaagaattgaacacttccctaaaaagggttcaggaagcatacagtacgattaaa
tctttaaacccccgtcccgcgtatgccttggataacggggaatcaacggtgtacattgta
ccggatgtgtacgttatgcagaagaacggcgcgcacgaagccgccgtgcatcccttgtcc
tgcccgcagattacccttgccgaaagctatcagcgcctgctcagcctgagcggtgacgaa
gaaacgcgccgctatttgcaggagaagcatgaacaggcaagctggatcatgagatgcctc
gaggagcgcaagaagactttgtgccgcgtagccggcgccatattgaagctgcagcggcct
ttttttgaaagaggacaggattatctcgttcccttaacactcggcaggatagccgaagag
ctggagcttcatgagtccacggtaagccgggcggtccggggcaaatatatgcaatgtgta
tggggaacctttgagctgaaatatttttttccttccggaattacgggggaagacagcgat
tggacgccggatgccctgaagcgggtcatccgtgagcttatagagggagaggataagcag
gcagcctacagcgaccgccggatcgctgagcttctgcttgagcaaggcgcggtcatctcc
cgccggacggttgccaagtacagggaatccatgcggatcgcctctgctcccggcagacgt
gaatatccggtatag
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