Providencia rustigianii: NCTC6933_00450
Help
Entry
NCTC6933_00450 CDS
T06047
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
prj
Providencia rustigianii
Pathway
prj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
prj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC6933_00450 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prj03021
]
NCTC6933_00450 (rpoC)
03400 DNA repair and recombination proteins [BR:
prj03400
]
NCTC6933_00450 (rpoC)
Enzymes [BR:
prj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC6933_00450 (rpoC)
Transcription machinery [BR:
prj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC6933_00450 (rpoC)
DNA repair and recombination proteins [BR:
prj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC6933_00450 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
EAD9
Motif
Other DBs
NCBI-ProteinID:
VEB63326
LinkDB
All DBs
Position
1:452021..456244
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLIKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTSLERAQILTEEQYLDALEEFGDEFDAKM
GAEAIQGLLKNLDLENECETLREELNETNSETKRKKLTKRIKLLEAFIQSGNKPEWMILN
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGIYYMTRDCVNAKGEGMVLAGPKEAERVYRSG
HASLHARVKVRITEEVKDSEGNITINTGLVDTTVGRAILWMIVPKGLPYSLVNQALGKKA
ISKMLNTCYRVLGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKAGIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEAVINRDGEEEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGILMTPVIEGGDVKEPLRERVL
GRVTAEDILIPGTADILVPRNTLLHEKLCDLLEANSVDSVKVRSVVSCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVRNSGTLKL
FNAKYVTNTEGKLVITSRNTELRLIDEFGRTKESYKVPYGAHLTKGDGASVTGGETVANW
DPHTMPVVSEVSGIISFSDMLEGLSMTRQTDELTGLSSIVVMDTAERTSAGKDLRPALRV
IDANGKDVLIPNTDMPAQYFLPGNAIVQLDDGVSINAGDTLARIPQESVGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPLDGSEPYEEMIPKWRQLNVFE
GEIVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKVTIEDSGSSEFLEGEQVEYSRVKVANRKLENEGKIPANFGRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQDRIRRRHLSDVVD
APQVSADEATANLAELLNAGFSSDNQN
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttaataaagtttctgaaagcgcaaaccaagaccgaagagtttgatgcgatc
aaaattgctctggcatcacctgacatgatccgttcatggtcattcggtgaagttaaaaag
ccagaaaccataaactaccgtacgttcaaacctgagcgtgatggtcttttctgtgcgcgt
attttcgggccagtaaaagattacgaatgtttatgcggtaagtacaaacgtttaaaacac
cgtggtgtgatttgtgagaagtgtggcgttgaagttacacaaactaaagtccgtcgtgag
cgtatgggtcatattgaactcgcatctccgactgcacatatttggttcttaaaatcactg
ccatcccgtatcggtttgctgcttgatatgccactgcgtgatatcgaacgcgttctgtat
tttgaatcatatgttgttgttgaaggcggtatgaccagccttgaacgcgcacagattctg
acagaagagcaatacttagatgcgctggaagagttcggtgacgaatttgacgcgaaaatg
ggtgcggaagcaatccaaggtctgctgaaaaacctcgatcttgagaacgagtgtgaaacg
ctgcgtgaagagttaaacgaaactaactctgaaactaaacgtaaaaagctgactaagcgt
atcaaactgttagaagcgttcattcaatctggtaacaaaccagagtggatgatcttaaac
gttctgccagttttaccaccagatttacgtccattagttccattggatggcggtcgtttc
gcgacttcagatctgaacgatctgtatcgccgcgtaatcaaccgtaataaccgtctgaaa
cgtcttctggatctggctgcgccagacatcatcgtacgtaacgaaaaacgtatgctgcaa
gaagcggttgatgcactgttagataacggtcgtcgtggtcgcgcaatcactggttctaac
aaacgtcctctgaaatctttggccgatatgatcaaaggtaaacaaggtcgtttccgtcag
aacttacttggtaagcgtgttgactattctggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgcctaagaaaatggctcttgaattattcaaaccattt
atctatggcaaattagaattacgtggtctggcaacaaccatcaaagctgcgaagaaaatg
gttgagcgcgaagaagcggttgtttgggatatcttggatgaagttatccgcgaacaccca
gttatgctgaaccgtgcaccaacacttcaccgtctgggtatccaagctttcgaaccaatt
ctgatcgaaggtaaagctatccaattgcacccattagtttgtgcggcatataacgccgac
ttcgatggtgaccaaatggcggtacacgttcctctgactctggaagctcagttagaagca
cgtgcgttgatgatgtcaacaaacaacattctgtcacctgcaagtggtgagcctatcatc
gttccttctcaggacgttgtattgggtatctactacatgacgcgtgactgcgtaaacgcg
aagggcgagggcatggtattagccggtcctaaagaagctgagcgcgtttaccgttcaggt
catgcttcactgcatgcccgcgttaaagttcgtatcactgaagaagttaaagacagtgaa
ggtaacattacgattaacactggtttagttgataccactgttggtcgtgcaattttatgg
atgatcgtaccgaaaggtctgccgtactctctggttaaccaggcgttaggtaaaaaagcg
atctctaaaatgctgaatacttgttaccgcgtactgggtctgaagccgactgttattttt
gccgaccaaatcatgtataccggttttgcctatgcggcacgttctggtgcatcggttggt
atcgacgatatggttattccagagaaaaaagctgggatcatcgctgaagccgaagcagaa
gttgcagaaattcaggaacagttccagtctggtctggttacagcaggcgaacgttataac
aaagttatcgatatctgggctgcagcaaacgaacgtgttgctaaagcgatgatggaaaac
ttgtctactgaagctgtcatcaaccgtgatggtgaagaagaacaacaagtttcattcaac
agtatctttatgatggccgactccggtgctcgtggttctgctgcgcagattcgtcagcta
gcgggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaacaccaatcacg
gcaaacttccgtgaaggtctgaacgttctccagtactttatttctactcacggtgctcgt
aaaggtcttgcggataccgcattgaaaactgcgaactccggttatctgactcgtcgttta
gttgacgttgctcaggacttggtcgtcactgaagatgactgtggtactcacgaaggtatc
ctgatgactccggttatcgagggtggcgacgttaaagaaccactgcgtgaacgtgtactt
ggacgtgtaactgcagaagatatcctgatcccaggtactgcagatattctggttccacgt
aatacactgttacacgaaaaactgtgtgacctgttagaagctaactctgttgacagcgtg
aaagtacgttccgttgtaagttgtgaaactgacttcggtgtgtgtgctcactgttatggt
cgtgaccttgctcgtggtcatatcatcaacaaaggtgaagctatcggtgttatcgcggca
caatcaatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagaatctagcatccaagttcgtaactctggtaccctgaaactg
tttaatgcgaaatacgtcactaacacggaaggcaaactggttattacttctcgtaataca
gaattgcgtctgattgacgaattcggtcgtactaaagagagctataaagttccttacggt
gcgcatctgacgaaaggcgatggagcttcagtaactggcggtgaaaccgttgcaaactgg
gatccacatacaatgccagttgtcagtgaagtatcaggtattatcagcttctctgacatg
cttgaaggtctgtcaatgactcgtcaaactgatgagttaaccggtctatcttcaatcgtt
gttatggataccgctgagcgtaccagtgctggtaaagacttacgtcctgcactgcgtgta
atcgatgcaaatggtaaagatgttctgattcctaacacagacatgcctgctcagtatttc
ttaccgggtaacgcaattgttcagttagatgacggtgtctctatcaatgccggtgatact
ttagcgcgtattccacaagaatctgtgggtactaaagatatcacgggtggtctgccacgc
gttgctgacttgttcgaagcacgtcgtccgaaagaacctgcaatcctggcagaaatcagc
ggtattatctcgtttggtaaagaaaccaaaggtaaacgtcgtctggttatcacgccatta
gatggttctgagccgtacgaagagatgatccctaaatggcgtcagctgaacgtgttcgaa
ggtgaaattgttgaacgtggtgacgtagtatctgatggtccagagtctccacatgacatc
ctgcgtctgcgtggtgttcatgctgtgactcgttatatcaccaacgaagttcaggaagtt
taccgcttacaaggcgttaagattaacgataaacacattgaagttatcgttcgtcagatg
ctgcgtaaagttaccatcgaagattcaggaagctctgaattcctcgaaggtgagcaggtt
gagtactctcgcgttaaagttgcgaaccgtaaactggaaaatgaaggtaaaattccagct
aactttggtcgtgatctgttgggtattactaaggcatctctggcaacagaatcctttatc
tcggcagcatcgttccaagaaacgactcgcgtactgacagaagctgcggtagcaggtaaa
cgtgatgagctgcgcggtctgaaagagaacgttattgttggacgtctgatcccagcgggt
actggttttgcgtatcaccaagatcgtattcgtcgtcgtcatctgagcgatgttgtggat
gctccacaagttagcgcagacgaagcaacagcgaacttagcagaactgttaaatgcaggc
ttctctagcgataatcagaactaa
DBGET
integrated database retrieval system
