Providencia rustigianii: NCTC6933_02188
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Entry
NCTC6933_02188 CDS
T06047
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
prj
Providencia rustigianii
Pathway
prj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC6933_02188 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prj03400
]
NCTC6933_02188 (mfd)
Enzymes [BR:
prj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC6933_02188 (mfd)
DNA repair and recombination proteins [BR:
prj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC6933_02188 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
Rhomboid_N
RecG_dom3_C
DUF6007
Motif
Other DBs
NCBI-ProteinID:
VEB70476
LinkDB
All DBs
Position
1:2185362..2188808
Genome browser
AA seq
1148 aa
AA seq
DB search
MSSKFRYELPSRAGDVRHLGCLVGAAGPLECAEMIERHQGPVVIVTRDMQNALRVRDELH
QFTQHPIEALSDWETLPYDNFSPHQEIISHRLSTLYRLPTMQKGALILPVNTLMQKVCPP
DFLTGHALVMAKGDKLSRDNLREELDKAGYRHVEQVLEHGEYAIRGALLDLFPMGSDLPF
RIDFFDDEIDSLRTFDVDTQRTLEEVPDINLLPAHEFPTDKDAIERFRSQWRERFEVRRD
PEHIYQQVSKQTLPSGIEYWQPLFFAEPLPSLFDYLPANTLFVSQNLQEPAERFQQDAKQ
RYESRGVDPMRPLLPPEELWLTVEQLNQHLKNWPRIQLSIDSLPKKAANTNLDYQPLPDI
STQGQSKTPLEKLRQFTEQFDGTIVFSVESEGRRETVSELLARLKIRPEIIPHYTSPTES
RFAITIGAAEHGFIQTESHRALICESDLLGERVARRRSDTRRTINTDTLIRNLAELRPGQ
PVVHIEHGVGRYQGLTTLEAGGIQAEYLILTYAGNDKLYVPVSSLHLISRYAGGADENAP
LHKLGSDSWGRARQKAAERVRDVAAELLDIYAQRAAKAGFAFKHDKQQYQEFCHGFPFET
TADQEMAINAVLSDMCQPIAMDRLVCGDVGFGKTEVAMRAAFLAISNNKQVAVLVPTTLL
AQQHFDNFRDRFANWPVRIEMLSRFRTAKEQQQIISDTAEGKVDILIGTHKLLQNDIHWK
DLGLLVVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA
RRLAVKTFVRQYDDLIVREAILRETLRGGQVYYLYNDVENIEKAKARLEALVPEARFVVG
HGQMRERELERVMTDFHHQRFNVLICTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG
RVGRSHHQAYAYLLTPHPKAMTTDAQKRLEAISSLEDLGAGFALATHDLEIRGAGELLGD
DQSGQMTTIGFTLYMELLESAVDALKEGREPSLEDLTSQQTEIELRMPVLLPDDYIHDVN
IRLSFYKRIASAKDQQELDELRIELIDRFGMLPDAGKFLLATAGIRLQAQKLGVKRIEAH
EKGGFVEFGEKNKVDPSFLISLLQNQPKTFRLDGPVRLKFFHDLADRAGRLEFIKQLISD
FEEHQLPS
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcaaaatttcgttatgaactcccaagccgtgctggtgatgtccgccatttaggt
tgtttagttggtgccgcaggtcccctcgaatgtgcggaaatgattgaacgccaccaagga
ccggttgttattgttactcgcgatatgcaaaatgcactacgcgttcgtgatgaactccac
cagttcactcaacatcctattgaagccttatcagattgggaaactctcccctacgataat
ttttcaccacatcaagaaattatttctcatcgcttatcgacgttgtatcgcttgcctact
atgcaaaaaggggcgctgatcctccctgttaatacgctgatgcaaaaagtgtgtccaccc
gattttcttactgggcatgcattggtgatggcgaaaggggataaactgtcccgagacaat
ttacgagaagaactggataaggcgggctatcgtcatgttgaacaggttcttgaacatggt
gaatatgctattcgtggtgcactcctcgacctctttcccatgggcagtgacttaccgttc
cgcattgatttttttgacgacgaaatcgatagtttacgtacctttgatgtagatacccaa
cgaaccttagaagaagttcctgacattaatttactgccggctcacgaattcccaacagat
aaagacgcgattgagcgttttcgcagtcaatggcgggaacgttttgaagtacgccgtgat
cctgagcatatttatcagcaagtgagtaaacagactttacccagtggtattgagtattgg
cagccactattttttgctgagccactgccttctttgtttgactatttacctgcaaatacc
ttgtttgtttcacaaaacctacaagaacctgccgagcgttttcagcaagatgccaaacaa
cgctatgagagccgtggtgttgacccaatgcgcccgctacttcctcctgaagaactgtgg
ttaaccgtcgaacaactgaatcaacatttaaaaaactggccacggattcaactttccatt
gattcattaccgaagaaagcggcaaataccaatttagattaccaaccactaccggacatt
agtacccaaggtcagagtaaaacaccgctagaaaaattacgccagtttacggaacagttc
gatggtacgattgttttttctgtagaaagtgaaggtcgccgagaaacggttagcgagctg
ctagcgcgcttaaaaattcgtccagagattattccccattacacatctccgacagaaagc
cgctttgccattaccatcggggcggctgagcatggatttattcaaactgaaagccatcgc
gcccttatttgtgaaagtgatttgctgggtgaacgtgttgcccgccgccgtagtgacacc
cgtcgaacaattaacaccgatactctgatccgcaaccttgcagagttacgccctggccaa
cccgtggtgcatattgagcatggtgtcggccgctatcagggtttgacaactttagaggct
ggcggtatccaagccgaatatttgatccttacctatgctgggaatgacaagctgtatgtg
cctgtctcttcattgcatttgatcagccgctacgcaggtggcgctgatgagaatgcaccc
ttgcataaattgggtagcgatagctggggacgcgctcgccaaaaagcggcggaacgagtc
cgtgatgtggcggctgaacttttggatatttacgctcagcgcgctgccaaagcaggcttt
gcgtttaaacacgataagcagcaatatcaagaattttgccacgggttcccgtttgaaacc
actgctgaccaagagatggcaatcaatgccgtcttgagtgacatgtgccaacctattgcg
atggatcgtttagtgtgtggtgatgtgggctttggtaaaacagaagtcgccatgcgcgca
gcatttttagccatcagtaataataagcaagtcgccgtactggtgccaacgaccctatta
gctcagcaacattttgataatttccgtgaccgatttgcaaattggcccgtacgaattgaa
atgttatcccgctttagaaccgcgaaagagcagcagcaaattattagtgataccgcagaa
ggtaaagtggatattctgattggtacccataaattattgcaaaatgatatccactggaaa
gaccttgggctactggtcgttgatgaagagcatcgatttggtgtgcgccataaagaacgc
attaaagccatgcgcgccgatgtggatattttaacattgaccgcaacgcctatccctcga
accttaaatatggccatgagtggaatgcgcgatctctcgattatagcaactccacccgct
cgccgattagccgtaaaaacctttgttcgccaatatgatgatttgatcgttcgcgaagca
atcctgcgggaaactttacgcggtggtcaggtttattatctatataacgacgtcgaaaat
attgaaaaagccaaagctcgacttgaagccttggttcctgaagcgcgctttgtggttggt
cacggtcagatgcgtgaacgagaattagaacgcgttatgaccgattttcaccatcagcgt
tttaatgtattaatttgcaccacaattattgaaaccggtatcgatattccaacggccaat
accatcattattgaacgtgctgatcattttggtttagcccagttacaccaactgcgtgga
cgcgtaggtcgttctcatcatcaagcttatgcgtatttgttaactccacatccaaaagcc
atgacgacggacgctcaaaaacgattggaagctatttcatcccttgaggatttaggcgct
ggctttgctcttgcgacccatgatcttgagatccgcggggctggcgagctactcggtgat
gaccaaagcggtcaaatgaccacgattggttttacgctatatatggaactgctcgaaagt
gcggttgatgcgttgaaagaaggtcgagagccttctcttgaagatctcaccagccagcaa
actgaaattgaattacgtatgccggttcttttaccggatgactatattcatgatgttaat
attcgactttctttctataagcgtattgctagcgctaaagaccaacaggaactggatgaa
cttcgcattgagttgattgaccgctttggcatgttacctgatgctggtaaatttttatta
gccactgcggggatccgattacaagcccaaaaactgggagtcaaacgtatcgaagctcat
gaaaaaggcgggtttgtcgaatttggtgagaaaaataaggtcgacccaagtttcttgatt
agcttactgcaaaatcagccaaaaaccttccggctagacggccccgttagactgaaattt
ttccatgatctggcagatagagctgggcgcttagaatttattaagcagctaatctctgat
ttcgaagagcatcaattaccatcataa
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integrated database retrieval system
