Pedobacter riviphilus: H9N25_00405
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Entry
H9N25_00405 CDS
T08657
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
prk
Pedobacter riviphilus
Pathway
prk02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
prk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
H9N25_00405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prk03021
]
H9N25_00405
Transcription machinery [BR:
prk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
H9N25_00405
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
GerE
HTH_40
DUF722
Homeodomain
HTH_28
HTH_24
HTH_36
HTH_5
HTH_23
HTH_11
HTH_38
HTH_20
HTH_29
HTH_SB
Motif
Other DBs
NCBI-ProteinID:
QNR85008
UniProt:
A0ABX6THL5
LinkDB
All DBs
Position
85207..85785
Genome browser
AA seq
192 aa
AA seq
DB search
MSKLTREKELELLRRLLLDDEEAFASLFYGYKDKLYGFIFRITESSEIAKDIVQDVFLKI
WNTRHNTHHVENFNAFVYRMAKNAALDHLKRKSRELIAVSDLRLISDEHMASNPFEDMKA
TEIQSKFEQALKNLPKQQRVVYELRHLEGEEYSEIAKKLNLSVATIRSHFRNALIALKAG
LFLLLFMMFFRF
NT seq
579 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagttaacacgtgaaaaagagctggaattacttcgtcgcctattattggatgat
gaggaggcttttgcttctcttttttacggctataaagataaactctacggctttattttt
aggataacagaatccagcgagattgcaaaagatatcgttcaggatgtttttctaaaaatt
tggaacacacgtcataatacccatcatgtagaaaatttcaatgcttttgtctaccgtatg
gccaaaaatgctgctcttgatcacttgaagcgaaaatcgcgtgagttaatagctgtttcc
gatcttcgcctgatttctgatgagcacatggccagcaatccattcgaggatatgaaagcc
acagaaatccaatcgaaattcgaacaagctttaaaaaatctgccaaagcagcagcgcgta
gtctatgagctaaggcatttggaaggggaagagtattctgaaattgcaaaaaaactaaat
ctttctgttgcaacgattcggagccatttcagaaatgcgctcattgcgctaaaagcaggc
ctttttttgctgcttttcatgatgttttttcgcttctaa
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