KEGG   Pedobacter riviphilus: H9N25_00405
Entry
H9N25_00405       CDS       T08657                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
prk  Pedobacter riviphilus
Pathway
prk02020  Two-component system
Brite
KEGG Orthology (KO) [BR:prk00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    H9N25_00405
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:prk03021]
    H9N25_00405
Transcription machinery [BR:prk03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     H9N25_00405
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4_2 Sigma70_r4 Sigma70_ECF GerE HTH_40 DUF722 Homeodomain HTH_28 HTH_24 HTH_36 HTH_5 HTH_23 HTH_11 HTH_38 HTH_20 HTH_29 HTH_SB
Other DBs
NCBI-ProteinID: QNR85008
UniProt: A0ABX6THL5
LinkDB
Position
85207..85785
AA seq 192 aa
MSKLTREKELELLRRLLLDDEEAFASLFYGYKDKLYGFIFRITESSEIAKDIVQDVFLKI
WNTRHNTHHVENFNAFVYRMAKNAALDHLKRKSRELIAVSDLRLISDEHMASNPFEDMKA
TEIQSKFEQALKNLPKQQRVVYELRHLEGEEYSEIAKKLNLSVATIRSHFRNALIALKAG
LFLLLFMMFFRF
NT seq 579 nt   +upstreamnt  +downstreamnt
atgtcaaagttaacacgtgaaaaagagctggaattacttcgtcgcctattattggatgat
gaggaggcttttgcttctcttttttacggctataaagataaactctacggctttattttt
aggataacagaatccagcgagattgcaaaagatatcgttcaggatgtttttctaaaaatt
tggaacacacgtcataatacccatcatgtagaaaatttcaatgcttttgtctaccgtatg
gccaaaaatgctgctcttgatcacttgaagcgaaaatcgcgtgagttaatagctgtttcc
gatcttcgcctgatttctgatgagcacatggccagcaatccattcgaggatatgaaagcc
acagaaatccaatcgaaattcgaacaagctttaaaaaatctgccaaagcagcagcgcgta
gtctatgagctaaggcatttggaaggggaagagtattctgaaattgcaaaaaaactaaat
ctttctgttgcaacgattcggagccatttcagaaatgcgctcattgcgctaaaagcaggc
ctttttttgctgcttttcatgatgttttttcgcttctaa

DBGET integrated database retrieval system