Pedobacter riviphilus: H9N25_03165
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Entry
H9N25_03165 CDS
T08657
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
prk
Pedobacter riviphilus
Pathway
prk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
prk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H9N25_03165 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prk03021
]
H9N25_03165 (rpoC)
03400 DNA repair and recombination proteins [BR:
prk03400
]
H9N25_03165 (rpoC)
Enzymes [BR:
prk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H9N25_03165 (rpoC)
Transcription machinery [BR:
prk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H9N25_03165 (rpoC)
DNA repair and recombination proteins [BR:
prk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H9N25_03165 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QNR85492
LinkDB
All DBs
Position
773836..778122
Genome browser
AA seq
1428 aa
AA seq
DB search
MSYKKDNKLKSNFTSITISLSSPEIILERSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIALVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDLIIYYERYVVIQSGLMAEEGINYMDFLTEEEYLDILDKLPKENQYLDD
KDPNKFIAKMGAEALEDLLKRIDLDTLSYDLRHQAANETSQQRKNEALKRLQVVEAFRGA
NTRIENRPEWMIVKIVPVIPPELRPLVPLEGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVKTEGNRALKSLSDILKGKQGRFRQNLLGKR
VDYSARSVIVVGPSLKLHECGIPKDMAAELYKPFIIRKMIERGVVKTVKSAKKIVDRKDP
LVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHLPLGNAAILEAQVLMLAAHNILNPANGTPITVPSQDMVLGLYYITKGRRTDETRVVK
GQDSAFYSPEEVIIAYNEKELDLHAFIKVRVNVKQADGSIVNKLTETTVGRVLFNQMVPE
EVGYINELLTKKSLRDIIGEVVKMTGMARASQFLDDIKELGFKMAFQGGLSFNLQDVNIP
VEKHTLLEQAAAEVEEVRNNYNMGFITNNERYNQIIDIWTRINNRLTTFVMTQLSSDNQG
FNSVYMMLDSGARGSKEQIRQLCGMRGLMAKPQKSGSGGDIIENPILSNFKEGLSVLEYF
ISTHGARKGLADTALKTADAGYLTRRLHDVAQDMIVNDNDCGTLRGMYTTALKDNEDIVE
PLYDRILGRTSLHDVYNPLDNTLLVGAGEDINEDVAKLIEESPLEGIEIRSVLTCESKRG
VCALCYGRNLASGKRVQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAAESNIVAK
FDGVVEFENIRTVDTQTEDGTVQVVLGRSGEFRIVEPGSGRVIVTNNIPYGAFLFVKEGD
KVTKGDKICSWDPYNAVILSEFAGKAQFDAIIDGVTYREESDEQTGHREKVIIDTRDKTK
NPSVQIVDKKGEFIKGYNIPVGAHVSVDEGETIQTGQIIAKIPRATGKTRDITGGLPRVT
ELFEARNPSNPAVVTEIDGVVTLGGVKRGNREITIESKDGEVKKYLVPLSKHILVQDNDF
VKAGMPLSDGSISPADILAIKGPAAVQEYLVNGIQEVYRLQGVKINDKHFEVIVHQMMQK
VHIEDPGDTIFLENNAVDRWDFSEENDAMYDKKVVEDAGDSTEFKPGQIVSLRKLRDENS
QLKRKDLKQITVRDARPATASSILQGITRASLGTKSFISAASFQETTKVLNEAAIAGKRD
NMLGLKENVIVGHLIPSGTGVRGYERIIVGSQEEYDKLLASKQEEVEA
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacaaaaaggataataaattaaaaagcaatttcacatcaatcacgattagctta
tcgtctccagaaattattttggaacgttcaagcggtgaggtgttgaaaccagaaaccatt
aactaccgtacttacaaacctgagcgtgatggtttgttctgtgagcgtatttttggtccg
gtaaaagattacgaatgtcattgcggtaaatacaaacgtatccgttataaaggtattgtt
tgcgatcgttgtggtgttgaagtaactgaaaagaaagtacgtcgtgagcgtatgggccac
attgctttagtggttcctgttgcacacatctggtacttccgctctttaccaaacaaaatc
ggttatttattaggtttacctactaaaaaattagatttaattatctattacgagcgttat
gtagttatccagtcgggcttaatggccgaggaaggtatcaactatatggacttcttaaca
gaggaagaatatttagatatcttagataaattacctaaagaaaaccaatatttagacgat
aaagatcctaataaattcatcgccaaaatgggtgctgaagcattagaagatttattaaaa
cgtattgatttagatactttatcttacgacttacgtcaccaggcagctaacgaaacttct
caacagcgtaaaaatgaggctttaaaacgccttcaggttgttgaagctttccgtggtgcc
aatacacgtatcgagaatcgccctgagtggatgattgttaaaatcgttccggttattcca
ccagaattacgtccgttggttccattagaaggtggtcgtttcgctacttccgatttaaat
gatttataccgtcgtgtaattatccgtaacaaccgtttaaaacgtttgatcgagattaaa
gcaccagaggtaattttacgtaacgaaaaacgtatgttgcaggaagctgtagattcgttg
ttcgataactcacgtaaggttaacgcggtaaaaactgaaggtaaccgtgccttaaaatca
ctttcagatattttgaaaggtaaacaaggtcgtttccgtcagaacttattaggtaaacgt
gtggattattcagctcgttcggtaattgttgtagggcctagccttaaattacacgagtgc
ggtattcctaaagatatggctgctgagctttacaaaccgttcattattcgtaagatgatt
gagcgtggtgtagtaaaaacagttaaatctgctaagaaaatcgttgatagaaaagatcca
ttagtttgggatattttagaaaatgtattaaaaggtcacccggtattattaaaccgtgca
cctacgctacacagattaggtatccaggctttccagccaaaattaattgaaggaaaagca
atccagttacacccattagtttgtaccgcattcaacgccgattttgatggtgaccagatg
gctgttcacttaccgttaggtaatgcagcaattttggaagcccaggtattaatgttggct
gcacacaacatcttaaaccctgcaaatggtacgccaattacagtaccttctcaggatatg
gttttgggtctttattacattactaaaggccgcagaacagatgaaactagagttgtaaaa
ggacaggattctgctttctattctccagaagaagttattattgcttataacgagaaagaa
ttagacttgcatgcatttatcaaagtaagggtaaatgttaaacaagcagatggttctatc
gttaataaattaactgaaactacggtaggtagggtattgttcaaccaaatggttcctgaa
gaggttggttatatcaatgaattattaaccaaaaaatctttaagggatattattggtgaa
gtagtgaaaatgactggtatggcccgtgcttctcaattcttagatgatatcaaagaatta
ggtttcaaaatggcattccaaggaggtttatcgttcaacctacaagacgtaaacatcccg
gtagaaaaacatactttattagaacaggcagcagctgaggttgaagaggtaagaaacaac
tataacatgggtttcattaccaacaacgagcgttacaaccagattatcgatatctggacc
cgtatcaacaacaggttaactactttcgttatgactcagttatcatcagataaccaaggt
tttaactcagtttacatgatgcttgattcaggtgcacgtggatctaaagagcagattcgt
cagctttgcggaatgcgtggtttgatggcgaaacctcaaaaatcaggttcaggtggcgat
atcattgaaaacccgatcttatcaaactttaaagaaggtttatcggtattagagtacttt
atctctactcacggtgcgcgtaaaggtttggcggatacggcgttaaaaacggcggatgcg
ggttacttaacccgtcgtttacatgatgtggcacaggatatgattgttaacgataacgat
tgtggtaccttaagaggtatgtataccactgcgttaaaagataacgaagatattgttgaa
ccattatacgataggattttaggtcgtacttcattacatgatgtgtacaatccattggat
aacactttattggtaggtgcgggcgaagatattaacgaagatgtagctaaattgatcgaa
gaatctccattagaaggtatcgagatccgttcagtattaacttgcgaatctaaacgtgga
gtttgtgcattatgttatggccgtaacctggcatctggtaaacgtgttcaaagaggtgag
gcagttggtgtaattgcagcacagtcaatcggtgagccgggtacacagttaacacttcgt
actttccacgtgggtggtactgcatcaaacattgctgcagaatctaacatcgtagctaag
tttgatggtgttgttgagttcgaaaatatccgtacagtagatacacaaacagaagatgga
acagtacaggttgtattgggccgttcaggtgagtttagaattgttgagccaggaagcggt
agagttatcgtaaccaacaacattccgtacggagctttcttattcgttaaagagggtgat
aaagtaactaaaggcgataaaatttgttcgtgggatccgtacaacgcggttatcctttca
gagtttgctggtaaagcacaattcgatgccattattgatggtgtaacttaccgcgaagaa
tctgatgagcaaactggtcaccgcgaaaaagtgattatcgatacccgtgataaaacgaaa
aacccttcagttcagatcgttgacaaaaaaggagagtttatcaaaggttataacatcccg
gtaggtgcacacgtttcagttgatgaaggtgaaacgatccaaacaggtcagattatcgct
aagattcctcgtgcaactggtaaaacccgggatattacgggtggtttacctcgtgtaacg
gaattattcgaagcacgtaacccatctaacccagctgtagtaactgaaattgatggtgtg
gtaactttaggtggtgttaaacgtggtaaccgtgagatcacaatcgaatctaaagatggt
gaagttaaaaaatacctggttccattatcgaaacacatccttgtacaggataacgacttt
gtgaaagcaggtatgccattatctgatggttcaatttctcctgctgatatccttgcaatt
aaaggacctgctgcagttcaggaatatttagtaaatggtattcaagaggtttatcgttta
caaggtgtgaaaattaatgataaacatttcgaggtgattgttcaccagatgatgcagaaa
gttcacatcgaagatccgggagatactattttcttagaaaacaatgcagtagatcgttgg
gacttctcagaagaaaacgatgccatgtacgacaagaaagttgttgaagatgcaggcgat
tcgactgaattcaaaccaggtcagattgtttcattacgtaaattaagagatgaaaattct
cagttaaaacgtaaagatttaaaacagattacggtgagagatgcaagaccggcaactgcg
agttctatcttacaaggtattacacgtgcatcattaggtactaaatcgttcatttctgcg
gcttcgttccaggaaactacgaaagtattaaatgaggcagcaattgcaggtaaacgcgat
aatatgttaggcttgaaagaaaacgtgatcgtaggtcacttaatcccttcaggtactggt
gtacgtggttacgaaagaatcattgttggttctcaagaagaatacgataaattattagct
tcgaaacaagaagaagtagaagcttaa
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integrated database retrieval system
