Pedobacter riviphilus: H9N25_04730
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Entry
H9N25_04730 CDS
T08657
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
prk
Pedobacter riviphilus
Pathway
prk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9N25_04730 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prk03021
]
H9N25_04730 (rho)
03019 Messenger RNA biogenesis [BR:
prk03019
]
H9N25_04730 (rho)
Transcription machinery [BR:
prk03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
H9N25_04730 (rho)
Messenger RNA biogenesis [BR:
prk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
H9N25_04730 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
ATPase_2
AAA_25
AAA_22
OB_RNB
Mor
Motif
Other DBs
NCBI-ProteinID:
QNR85771
UniProt:
A0ABX6TJU6
LinkDB
All DBs
Position
complement(1137858..1139588)
Genome browser
AA seq
576 aa
AA seq
DB search
MFSKTELNDKLTTELRELAKSYGIEGADSLRKIDLVEVLLHQQEIINAAKAGADPYSEIE
PIAATPAPKTKAAKAPKVTAAASTVVADKPDATTADKPVKKRARLTKAEPVTAIEKRRDA
VTLFDEPQHQQQPERQPDRIVEAEESVKPISALIEESAEVLPVAPKQKQEPKEKQEKPQR
DENRQQKQPGGGNHHKNENSYSNLDFDNVITNEGVLEIMPDGYGFLRSADYNYLTSPDDI
YVSQSQIKLFGLKTGDTVKGSIRPPKEGEKYFPLVRVETINGRIPAEVRDRVPFDYLTPL
FPTERLNLFTDTNNYSTRIMDLFTPIGKGQRGLIVAQPKTGKTNLLKEVANAIAKNHPEV
YLIILLIDERPEEVTDMARSVRAEVIASTFDEPAERHVKIANIVLEKSKRLVESGHDVVI
LLDSITRLARAYNTTAPASGKILSGGVDANALHKPKRFFGAARNIENGGSLTILATALTD
TGSKMDEVIFEEFKGTGNMELQLDRKLSNKRIFPAIDITASSTRRDDLLHDRDTLQRVWI
LRNHLADMNSQEAMEFVQSQIKGTKSNEEFLISMNS
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgtttagtaaaacagaattaaatgataagctcacaacagaattacgtgagctagcaaaa
agctatggcattgaaggtgccgactccctaagaaaaatcgaccttgttgaagtcctttta
caccaacaagaaattataaatgccgctaaagctggtgcagatccttatagcgaaattgaa
cctatagcagctactcctgcgcctaaaactaaagctgcaaaagccccaaaagttacggca
gcagcatctacagtagtagccgataagcccgatgcaactacagctgataagcctgttaaa
aaaagagcgaggttaacaaaagcggaacctgtaacagcaattgaaaagagaagagatgct
gtaacattatttgacgaacctcagcaccaacaacagccagaaagacaacccgacagaatt
gttgaagctgaagaaagtgtaaaaccaatctcagctttaatagaagaaagtgcagaagta
cttccggtagcgccaaaacaaaaacaagagcctaaagaaaagcaggaaaaaccgcagcgc
gatgaaaatcgccagcaaaaacaaccaggcggaggcaatcaccacaaaaacgaaaacagt
tactccaacctggatttcgataacgtaattacaaatgagggtgttttagaaattatgcct
gatggttatggtttcttgcgttcggcagattacaactacttaacttctcctgatgatatt
tatgtatctcagtctcaaataaaactttttggattaaaaaccggtgatacggtaaaaggg
agcatccgtccgccaaaagagggtgaaaaatatttccctttggttcgggtagaaaccatt
aacggcagaatccctgctgaggttcgcgaccgtgttccttttgattatttaacgccactt
ttcccaaccgaaagattaaacctatttacggatacaaacaattattctacccgtattatg
gatttatttacaccgattggtaaaggacagcgtggtttaattgttgcacagcctaaaact
ggtaaaaccaatttattgaaagaagtggctaatgcaattgctaaaaaccaccctgaagtt
tatttaattatcttattaattgatgagcgccctgaagaggttaccgatatggcccgaagt
gtaagagctgaggtaattgcctcaactttcgatgagccagctgaacgtcatgttaaaatt
gccaacattgttttagaaaaatcgaaacgcctggtagaaagcggacatgatgtagtaatc
cttttagattcgattacacgcttggcgagagcgtataacactacagcgcctgcatcaggt
aaaatattatcaggtggtgttgatgccaacgctttacacaaaccaaaacgtttcttcggt
gcggcccgcaacatcgaaaacggtggttcattaaccattttggctactgcattaaccgat
acaggttctaaaatggatgaggtgatctttgaagaatttaaaggaaccggtaacatggag
cttcagttggatcgtaaattatcgaacaaacgtatcttcccagctatcgatattacggca
tcaagcacccgtcgcgatgatttattgcacgacagggatacattacagcgcgtatggata
ttacgtaaccaccttgctgatatgaatagccaggaagcgatggaatttgttcaatctcaa
ataaaagggacaaaaagtaacgaagagttcttaatttcgatgaacagctaa
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