Pedobacter riviphilus: H9N25_05665
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Entry
H9N25_05665 CDS
T08657
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
prk
Pedobacter riviphilus
Pathway
prk02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
prk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
H9N25_05665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prk03021
]
H9N25_05665
Transcription machinery [BR:
prk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
H9N25_05665
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
Sigma70_r2
HTH_38
HTH_23
HTH_28
GerE
Terminase_5
HTH_40
DUF722
UPF0122
DUF2774
HTH_10
DUF8604
HTH_11
HTH_Tnp_ISL3
HTH_24
HTH_3
wHTH_Par
Phage_antitermQ
PF0610-like_N
HTH_36
HTH_AsnC-type
HTH_SB
HTH_WhiA
HTH_7
Motif
Other DBs
NCBI-ProteinID:
QNR85930
UniProt:
A0ABX6TM06
LinkDB
All DBs
Position
1372396..1372950
Genome browser
AA seq
184 aa
AA seq
DB search
MEKINALKTGSDVAFKAVFESSWEKVYRYLVNKTRDADQAKDLTQLVFIKLWTYRISLSD
EIPLDTQIFRKTKQVLIDWLRAEMRKREYIFSNSPEATDSSWDQINHQTDITNHLYWAID
KLPPKRKEIFELRHIQGYSYKEIAEKLGISTKTIDSQLVKANIQLRKILQLSIWAAITGS
GFLN
NT seq
555 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaatcaatgccctgaaaaccggatctgatgttgctttcaaagcagtattcgaa
agctcatgggaaaaggtctatcgttatttagtaaacaaaacaagggatgctgaccaggca
aaagatctgacacagctggtttttatcaagctatggacctaccggatcagtttgtcagat
gaaattccattagatacccaaatattccgcaaaacaaaacaggtactgatcgattggcta
agggcagaaatgcgaaaaagggaatatattttctcaaattcccctgaggctacagatagt
agctgggaccagatcaatcatcagaccgatatcacaaaccatctttattgggcaatagac
aaactaccgccaaagagaaaagaaatatttgagctaaggcatatacaaggttattcctat
aaggaaatagcagaaaagctcggtatttcaacaaagaccatagacagccagctggttaaa
gccaatatccagctgcgcaagattctgcaactctctatctgggcagccatcacaggttct
ggatttctaaattaa
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integrated database retrieval system
