Pedobacter riviphilus: H9N25_07175
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Entry
H9N25_07175 CDS
T08657
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
prk
Pedobacter riviphilus
Brite
KEGG Orthology (KO) [BR:
prk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prk03032
]
H9N25_07175 (topA)
03400 DNA repair and recombination proteins [BR:
prk03400
]
H9N25_07175 (topA)
Enzymes [BR:
prk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
H9N25_07175 (topA)
DNA replication proteins [BR:
prk03032
]
Prokaryotic type
DNA Topoisomerases
H9N25_07175 (topA)
DNA repair and recombination proteins [BR:
prk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
H9N25_07175 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
QNR86182
LinkDB
All DBs
Position
complement(1773347..1775908)
Genome browser
AA seq
853 aa
AA seq
DB search
MAKNLLIVESPAKAKTIEGYLGKDFLVKSSYGHIRDLVKGDMAIDIKNNFAQTYEVPTDK
KNVVAELKKLAKEAEMVWLASDEDREGEAISWHLFETLGLKVEKTKRIVFHEITKPAILK
AIDNPRGIDYNLVNAQQARRVLDRLVGFELSPVLWKKVKPSLSAGRVQSVAVRLIVDRER
EVLNFNAAAAYKITAQFSTGKGREIVKAELPQRFENEADAEKFLQDCVNARFDITSLETR
PSKRNPAAPFTTSTLQQEASRKLGFSVARTMQVAQRLYEAGKITYMRTDSVNLSETAINA
AAAEIKSAYGDKYHQPRVYKTKSAGAQEAHEAIRPTYFDRHTVDGDISEKRLYDLIWKRS
IASQMSEALFEKTTAQITASTRKEHLVAEGEVLKFDGFLKVYLESTDDEETDEKEGGAIL
PPLTKGQELFLKEMQATERYSRPPARYTEASLVKKLEELGIGRPSTYAPTISTVQNRGYV
VKEDRDGKQRNFTAITLADGQVKKEIKSEITGAEKSKLFPTDIGEVVNDFLVEHFKGIVD
FNFTAKVEKEFDEIAQGLQEWTKMLHSFYNPFHSEVETTLETAERATGERLLGIDPATGK
NVYTKVGKFGPLVQIGELDEEEKPRYASLMRTQSVATITLDDALELFKLPFQLPDFEGKE
VVIGVGRFGPYVKWGESFISLPKNEEPLSVTYERAVEIIREKMDADAPIAFYEGLGVTKG
KGRFGPFIKWNDLFINIPAKGYDFDNLTQEDINTLIGKKIEKEANRYIKTWETEKISIEN
GRWGPFIRFGKLMLKLGNNEATKQKYTPEELADIDLEVVKKMIVEQVPNAFETKKKAPAK
KKAPVKKAVAKKK
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaaatttattaatcgtcgagtcacccgcaaaagctaaaactatagaaggctat
ttaggcaaagatttcctggtgaaatctagctatggccatatccgtgatttagttaagggc
gatatggcgattgatatcaagaataattttgcgcagacctacgaggtacctactgacaag
aaaaatgttgtcgccgaactaaaaaaactagctaaagaagccgaaatggtatggctagca
tccgatgaggaccgcgagggggaagcaatatcgtggcacttattcgaaactttgggccta
aaagtggagaaaacaaaacgtatcgtttttcacgaaattaccaaaccagccattttaaaa
gcaatagataatccgcgtggaattgattataatctggtaaatgcccaacaggcacgccgt
gtactagatcgtttggtgggtttcgaactttctcccgttttatggaaaaaagttaaacca
tcattatctgcaggccgcgtacaatcagttgctgtacgtttaattgttgatagagagcga
gaagttttaaactttaatgcagctgcagcctataaaatcacggctcagttttccactggc
aaaggaagagaaattgtaaaagcagaactgccacaacgtttcgaaaatgaggctgatgct
gaaaaatttcttcaagactgtgtaaatgcaagattcgatattaccagtttagaaacaagg
ccttcaaaacgtaatccggcagccccatttaccacctcaaccctgcaacaagaagcttcg
agaaaattaggtttttcggtggccagaaccatgcaggttgcacaaaggctgtacgaagcg
ggtaagattacttacatgaggacagactctgtaaacttatcagaaactgcgattaatgct
gctgctgccgaaattaaatctgcttacggcgataaatatcatcagccaagggtatataaa
accaaatcagcaggtgcacaagaagcgcacgaagccatccgcccgacgtatttcgacagg
cataccgtagatggagacatttcagaaaaacgtttatatgatttaatctggaaacgttca
attgcatcgcaaatgagtgaggctttatttgaaaaaacaactgctcagattactgcttca
accagaaaagaacacttagtggccgaaggtgaagtattaaagttcgacggtttcttaaaa
gtttatctggaatctactgatgatgaagaaactgatgaaaaagaaggcggtgcaattttg
cctcctttaacaaaaggacaagagctatttttaaaagaaatgcaggcaacagagcgttat
tcgcgcccgccagcaagatatacagaggctagtttggttaaaaaactagaagagctgggc
attggccgtccgtctacttatgcaccaaccatttctacagtacaaaaccgtggttatgtg
gttaaagaagatagagatggcaaacagcgtaattttacggctatcactttggctgatgga
caggtaaaaaaagaaatcaaatcggaaattacaggtgcggagaaatcaaaactcttccct
actgatatcggtgaggtagtaaacgacttcttggtagaacatttcaaaggtattgttgat
tttaacttcacagcaaaggtggagaaagaatttgatgaaattgcccaaggtttacaagaa
tggactaaaatgctgcactcattttataatcctttccacagtgaggtagaaacaacctta
gaaactgctgaacgcgctactggcgaacgcttattgggtattgaccctgctacaggtaaa
aatgtatacaccaaggttggtaaatttggaccattggtacaaatcggcgaacttgacgaa
gaggaaaaacctcgatatgccagtttaatgcgtacgcagtctgttgcaaccattacttta
gatgatgccctggagctgtttaaacttcctttccagttacctgattttgaaggtaaagaa
gtagtgatcggtgttggccgtttcggaccttatgtgaaatggggcgaaagttttatctcg
cttcctaaaaatgaggagcctttatcggtaacttatgaaagagcagttgaaattatcaga
gagaaaatggatgccgatgcgcctattgccttttatgaaggtttaggcgttacaaaaggt
aaaggacgctttggtccatttattaaatggaacgatctatttatcaatattcctgcaaaa
ggatacgatttcgataatttaacacaggaagatatcaatacattaattggcaaaaaaata
gagaaagaggccaacaggtacattaaaacctgggaaaccgaaaaaatatctattgaaaat
ggccgttggggaccgtttatccgctttggtaaactgatgctcaaattggggaataacgag
gctaccaagcaaaaatatacaccagaagaattggctgatattgatttggaagtagttaaa
aagatgattgtagagcaggttcctaatgcttttgaaacgaagaaaaaagcaccggcaaag
aaaaaagcgcctgttaaaaaggctgtagctaagaaaaaataa
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