Pedobacter riviphilus: H9N25_07425
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Entry
H9N25_07425 CDS
T08657
Name
(GenBank) GIY-YIG nuclease family protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
prk
Pedobacter riviphilus
Pathway
prk03030
DNA replication
prk03430
Mismatch repair
prk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
prk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H9N25_07425
03430 Mismatch repair
H9N25_07425
03440 Homologous recombination
H9N25_07425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prk03032
]
H9N25_07425
03400 DNA repair and recombination proteins [BR:
prk03400
]
H9N25_07425
Enzymes [BR:
prk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
H9N25_07425
DNA replication proteins [BR:
prk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
H9N25_07425
DNA repair and recombination proteins [BR:
prk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
H9N25_07425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DUF7508
DEDDh_C
GIY_YIG_2
DNA_pol_A_exo1
DNA_pol_D_N
Motif
Other DBs
NCBI-ProteinID:
QNR86226
LinkDB
All DBs
Position
complement(1829242..1830615)
Genome browser
AA seq
457 aa
AA seq
DB search
MLYAVVDIETTGGHASANGITEVAINIHDGNEIVESYTTLINPKQPIPAYITALTGIDDN
MLLDAPTFDDVALQIYQLLNDKVFVAHNVNFDYSFLKHHLAAAGYDLQCKKLCTVRLSRK
LIPGKSSYSLGKLCTALQIPIQNRHRAAGDADATSILFNLLLEYDQGGIIAEMLKKTSKE
QVLPPHLDKASILRLPNRPGVYYFKDSKGKIIYVGKAKDLKKRVTSHFTGNTPNRQRQDF
LRTIHHVDHVICGTELMALILEANEIKRLWPENNRAMKRYEHKYDLYVFEDQNGYLRLAI
DKHKKNNNALQSFNSLLEGYNFLNQLVDKYQLCAKLCYLQKTATKCYAHENGQCFGACSG
IETVAVYNKKLNAALSDVRNQQPSFALVDEGRKEEEFSCLVVENGKFYGMGYFTDKNYLA
EGMASIKNDLSTYQSNSYILNLILSHAEQFPQKLYKL
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgttatacgcagttgtagatatcgaaaccactggtggtcatgcctcagcaaatggtatt
accgaggttgccattaacatccatgatggcaatgaaatagttgaatcttacactacccta
attaatccgaagcagcctatacccgcttacattacggcgcttacaggtattgacgataac
atgttgttggatgccccgacatttgatgatgttgctttacagatttatcagttactaaac
gataaggtttttgtagcgcacaatgtaaacttcgattattcctttttgaagcatcatttg
gcagctgcaggatatgatctgcaatgtaaaaagctgtgtacggtaaggttgagcagaaaa
ctaattcctggcaaatcttcatatagtttaggaaaactttgtacagccttgcagatcccg
attcaaaaccgacaccgggcagcgggagatgcagatgcaacaagtatcctattcaattta
ttgctagaatacgatcagggaggcatcatagcagaaatgctgaagaaaacatcaaaagaa
caggttttaccacctcacttagacaaagcatctattttaaggttacccaaccgacctggc
gtatattattttaaggatagtaagggtaaaattatatatgttggaaaagcaaaagacctt
aaaaaacgtgtaaccagtcactttaccggtaatacacccaaccggcagcggcaggatttt
ttacgtactattcatcatgtagaccatgtaatttgcggtaccgaactgatggccttaatt
ttagaagccaatgaaattaaacgcctttggccagaaaataaccgggcaatgaaacgctat
gagcataaatatgatttatatgtttttgaagatcaaaatggttatttacgtttagcgata
gataagcataaaaagaacaataacgccctgcaaagttttaatagcctattagaaggttat
aattttttaaatcaactggttgataagtatcagctttgtgcaaaactctgttatttgcaa
aaaacagcaaccaaatgttatgctcatgaaaatggccaatgtttcggtgcatgcagtgga
atagaaactgtagccgtttataacaaaaagctaaatgcggcattaagtgacgttcgaaac
caacagccaagttttgctttggtagatgaaggcagaaaagaggaagaatttagctgcctg
gttgttgaaaacggaaaattttatggcatgggctactttaccgataagaattatcttgct
gaaggtatggcatcaattaaaaatgatttgtctacataccaatcaaacagttacatctta
aatcttattttaagccatgcagaacaatttccgcagaaattgtataaattgtaa
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