KEGG   Pedobacter riviphilus: H9N25_08555
Entry
H9N25_08555       CDS       T08657                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
prk  Pedobacter riviphilus
Pathway
prk02020  Two-component system
Brite
KEGG Orthology (KO) [BR:prk00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    H9N25_08555
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:prk03021]
    H9N25_08555
Transcription machinery [BR:prk03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     H9N25_08555
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r4 GerE Sigma70_ECF Sigma70_r2 HTH_24 HTH_40 Xre-like-HTH HTH_10 HTH_Tnp_ISL3 HTH_11 UPF0122 HTH_23 DUF722 wHTH_Par DUF1106 HTH_Tnp_4 PF0610-like_N HTH_5 HTH_3 HTH_28 HTH_Crp_2 FKBP_N_2 HTH_36 HTH_7
Other DBs
NCBI-ProteinID: QNR86426
UniProt: A0ABX6TNE6
LinkDB
Position
2108654..2109214
AA seq 186 aa
MAAYSKFTDEELTALLIEGDHAAYTEIYHRYWKKLFYIAGKKLGNMEEAEEVVQNIFMSL
WNRRAVITITTTLGAYLTTSVKYWIIKILDKQYHQQKYAKSIASNVLDDSTQQWLEFLDL
KEILDRYVSELPEKCQLVFNMSRNLNMSQKQIAEELNISEKTVEAHMGKAIKTLRTRFNH
FFLILL
NT seq 561 nt   +upstreamnt  +downstreamnt
atggctgcctacagcaaatttactgatgaggaattgactgccttgcttatagagggagac
catgctgcatataccgagatttatcatcggtattggaaaaagctgttttatatagccgga
aaaaaactgggcaatatggaagaagcagaagaagtggtacagaatatttttatgtcgctt
tggaacagaagagcagttattaccatcaccactactttgggtgcctatcttactacctcg
gtaaaatactggatcattaaaatactagataagcagtaccatcagcaaaagtatgccaag
agtattgccagtaatgtacttgacgattctacccagcaatggctggagtttctggacctg
aaagaaattctagacaggtacgtctctgaactgcccgaaaagtgccagctggtatttaac
atgagcagaaacctgaacatgtcccagaaacaaattgccgaagaacttaatatttctgaa
aaaacagttgaggcgcatatgggaaaggccataaaaaccctacggacaaggtttaatcac
ttctttttgattttgttgtaa

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