Pedobacter riviphilus: H9N25_08925
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Entry
H9N25_08925 CDS
T08657
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
prk
Pedobacter riviphilus
Pathway
prk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9N25_08925 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prk03019
]
H9N25_08925 (recQ)
03400 DNA repair and recombination proteins [BR:
prk03400
]
H9N25_08925 (recQ)
Enzymes [BR:
prk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H9N25_08925 (recQ)
Messenger RNA biogenesis [BR:
prk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H9N25_08925 (recQ)
DNA repair and recombination proteins [BR:
prk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
H9N25_08925 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Motif
Other DBs
NCBI-ProteinID:
QNR87127
LinkDB
All DBs
Position
2197459..2199648
Genome browser
AA seq
729 aa
AA seq
DB search
MDVKKSLFDNLQNFFGFDNFKGDQESIITNILEGNNTFVIMPTGGGKSICYQLPALMSEG
TAIVISPLIALMKNQVDQLRAFGGNDSIAHFLNSSLNKSEITQVKSDLLSGQTKLLYVAP
ESLAKQDNIEFLNLIKISFVAVDEAHCISEWGHDFRPEYRKIKQVIAGLGNNIPIIALTA
TATPKVQQDIMKNLGMTEATLFKSSFNRPNLFYEIRPKRDITKEIIKYIKSNPGKSGIIY
CLSRKKVEEVAEALNLNGISALPYHAGLDPKVRAETQDKFLMEDAEVIVATIAFGMGIDK
PDVRFVIHHDVPKSMEGYYQETGRAGRDGGEGVCIAFYSQKDVDKLAKFMKDKPVSEREI
GTQILKEVIDYAESGVCRRKQILHYFGENFNETGCNCMCDNCKKPKKQFDAESQLSTLLK
FIEKSGEKFDDAHLLNVFLGLETAQTIAYEHSKVPEFGIGKEEGELVWKSIIRQAVLNNY
LFKDIDNYGLLKLTKQGRDFIVNPYSLKFILNEPIENGADDDDDDVKQGTGALDTHLLSL
LKELRKKIAKQKSVPPFVVFQDPSLEEMCTHYPITMEELRQISGVGSGKAMKFGTPFIEL
IKKYVEDNDIERPIDLIIKTQANKSQMKVSIIQNIDRQIGLEDIADSKGITYEEILKEVE
SIVNSGTKLNLNYFIDEVIDDDRQDEVFDYFRAAESDSIDEALNELGETDYTREEIQLMR
IKFMSELGN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgaaaaagtcgttatttgataacctacaaaatttcttcgggtttgataatttc
aagggtgatcaggagtcgatcattaccaatattttagagggcaataacacgtttgttatt
atgcctacaggcggagggaagtctatttgctatcagttacctgctttaatgagcgaagga
acagcaattgtgatctctccactaatcgcattgatgaaaaaccaggtagaccaattaagg
gcttttggtggaaatgacagtattgctcattttcttaattcatccttaaacaaatctgaa
attactcaagttaaatctgacctcttaagcgggcagactaaattattgtatgttgcgccc
gaatctctggcaaagcaggataatattgaatttttaaatctgattaaaatttctttcgtt
gccgttgatgaagcacattgtatctctgaatggggacacgatttcaggccagaataccgt
aagattaaacaggttattgcaggattggggaataacattccaattattgcactaaccgca
actgccacaccaaaagtgcaacaggatattatgaagaatcttggtatgacggaagcaacg
ttattcaaatcatcatttaataggccgaacctattttacgagatccgccctaaaagagac
attaccaaagagattattaaatacatcaagtctaatccaggtaaatcaggtattatctat
tgccttagccgtaaaaaagtagaggaagttgccgaagccctgaacctcaacggaatcagc
gctttgccttatcatgccggtttagatccaaaggttagggctgaaacgcaggataaattt
ttgatggaagatgcggaggtgatcgttgcaaccatcgcctttgggatgggcatcgacaaa
cccgatgtccgctttgttattcaccatgatgtgcctaaaagtatggagggttactaccag
gaaactggcagggccggacgtgatggtggcgaaggtgtatgcattgctttctactcccaa
aaagatgtagataagctggccaagtttatgaaagataaaccggtttctgaaagagaaatt
ggtacacagatattaaaggaggtgattgattatgccgaatctggcgtttgccgccgtaag
cagattcttcactatttcggcgaaaactttaacgaaacaggctgtaactgcatgtgtgat
aactgcaaaaaacctaaaaaacagtttgatgccgaaagtcagttatctaccttattaaag
tttattgagaaatctggagagaaattcgacgatgcacatttactaaacgttttcttaggc
ttagaaacagcgcaaaccattgcctacgaacatagtaaggttccagaatttgggattggt
aaagaggaaggtgagttggtgtggaaatcgattatccgccaggctgttttaaataattac
ctttttaaggatattgataattatggcttattaaagctaactaagcaaggaagagatttt
attgttaatccttatagccttaaatttatactaaatgaacccatagagaacggtgctgat
gacgatgatgatgatgtaaaacaaggcacaggtgctttagacacccatcttttatcattg
cttaaagaactacgtaaaaaaattgcaaagcagaaaagcgttccgccattcgtagttttc
caggatccatctttagaggaaatgtgtacccattatccgatcacaatggaagagcttcgt
cagatttctggtgtaggctcgggtaaagcaatgaaattcgggacaccttttatcgaattg
atcaaaaagtatgtcgaggataacgatatcgaacgtcctattgatttgattattaaaact
caggccaataagtcgcagatgaaagtttcgatcattcaaaatatcgatagacagattggt
ttggaagatattgccgattcgaaaggcattacttatgaagaaattctgaaagaagtagaa
tcgattgtaaattctggtactaaacttaacctgaattatttcattgatgaagtgattgat
gatgatagacaggatgaagtttttgattatttcagagcagccgaaagtgattctatagat
gaagcgcttaatgaactcggcgaaaccgactatacccgtgaagaaattcaattgatgcgg
attaaattcatgtcagaactaggaaattaa
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