Pedobacter riviphilus: H9N25_09760
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Entry
H9N25_09760 CDS
T08657
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
prk
Pedobacter riviphilus
Pathway
prk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9N25_09760 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prk03019
]
H9N25_09760 (pnp)
03016 Transfer RNA biogenesis [BR:
prk03016
]
H9N25_09760 (pnp)
Enzymes [BR:
prk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
H9N25_09760 (pnp)
Messenger RNA biogenesis [BR:
prk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
H9N25_09760 (pnp)
Transfer RNA biogenesis [BR:
prk03016
]
Prokaryotic type
tRNA degradation factors
H9N25_09760 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
S1_RRP5
HutF_N
Vip3A_N
Motif
Other DBs
NCBI-ProteinID:
QNR86640
LinkDB
All DBs
Position
complement(2386180..2388315)
Genome browser
AA seq
711 aa
AA seq
DB search
MNVIKKSFDLGDGRIVEIETGKLAKQADGSVVVKMGDTMLLATVVSTVGAKPGTDFLPLS
VDYQEKYAATGRIPGGFLRREARLSDYEVLISRLVDRALRPQFPSDYHSDTQVMISLISA
DKNIMPDCLAGLAASAALSVSDIPFNGPISEVRVAKIDGKLVINPFASDLERATLEFMVA
GSANDICMVEGECDEIQEDEMVEALKFAHDAIKVQCAVQVELTEATGKTVKREYSHEDHD
ADLKAKVYADTYDKVYAVAKAGGNKDVRKEGFTAIINEFFEAMPEDTADLTKAMAKHYYH
DVQYDAIRNLLLDEGIRLDGRQTTEIRPIWSEVGYLPAAHGSAVFTRGETQSLTSVTLGS
KDDEQMIDGAFFNGYQKFLLHYNFPGFSTGEVRPNRGAGRREIGHGNLAQRSLKKVLPQG
EANPYTIRVVSDILESNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGLITDEKTGKYA
ILSDILGDEDHLGDMDFKVTGTENGIVACQMDLKINGLSYEVLTKALLQAKDGRLHILNE
MKKTISTPNEDYKPHAPRIVSLTIDKEFIGAIIGPGGKIIQEMQRETGASISIEEVDGKG
IVEVFADNKAAIDAAVTRIRNIVAKPEIGEIYQGKVKSIMPFGAFVEVMPGKDGLLHISE
ISWERLETMDGVLKEGDKIEVKLLDIDKQGKMKLSRKVLLPRPEKPAAPKA
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtaataaaaaaatcgttcgatttgggcgatggcagaattgtagaaattgaaact
ggtaaactggctaaacaagctgatggttcggtggtggtaaaaatgggcgataccatgttg
ttagcaacagttgtatctactgttggggctaaaccaggtactgattttttacctttatcg
gttgattatcaggagaaatacgcggctacaggccgtatcccaggaggctttttacgtcgt
gaagcaagattatctgattacgaggtattaatttcacgtttggtagatagagctttacgt
ccgcagttcccttctgattatcactctgatacacaggtgatgatttctttaatctctgct
gataaaaatatcatgccagattgtttggcaggtttagcagcatcggctgcattatcagtt
tccgatattcctttcaacggtccgatttctgaagtgcgtgtagctaaaattgacggtaaa
ttggtaatcaacccatttgccagcgatttagaacgtgctacacttgaatttatggttgcc
ggttctgctaacgatatctgtatggtagaaggtgagtgtgatgaaattcaggaagatgaa
atggttgaagctttaaaatttgcacatgatgcaattaaagttcaatgtgctgttcaggtt
gaattaaccgaagcaacaggtaaaactgtaaaacgcgaatacagccacgaagatcacgat
gctgatttaaaagcaaaggtttacgctgatacttatgataaagtttatgccgtggctaaa
gccggtggtaataaagatgttcgtaaagaaggttttacagcaatcattaacgaattcttc
gaagcaatgccagaagatactgcagatttaaccaaggcaatggctaaacattattaccat
gatgttcagtacgatgccatcagaaatttattgttagatgaaggtatccgtttagatggc
cgtcaaactacagaaatccgtcctatctggagtgaagttggttatttgccggctgctcac
ggttcggctgtatttacacgtggcgaaactcaatcattaacttcagttactttaggtagc
aaagatgatgagcaaatgattgatggagctttctttaatggttaccagaaattcttattg
cactataatttcccaggtttttcaactggtgaggttagaccgaacagaggcgctggccgt
cgcgaaattggtcatggtaacttagctcagcgttcgttgaaaaaagtattgccacagggc
gaggcaaatccttatactatccgcgtggtttctgatattttagaatcaaatggttcatca
tcaatggcaactgtttgtgcgggtacattggcacttatggatgccggtattaaaatcaaa
gctccggtttcaggtattgcaatgggtttaattaccgatgagaaaaccggtaaatatgct
atcctttctgatattttaggtgatgaagatcatttaggtgatatggactttaaagtaacc
ggtacagaaaatggtattgttgcttgccagatggatttaaaaatcaatggtttatcttac
gaagtgttaaccaaagccttgttacaggctaaagatggtcgtttacatatcttaaacgag
atgaagaaaaccatcagcacacctaacgaagattacaaaccgcatgctcctcgtattgtt
tctttaactattgataaagaatttattggtgcaattattggccctggaggtaaaattatt
caggaaatgcaacgcgaaaccggtgcttcaatctctatagaagaagttgatggtaaaggt
attgtagaagtgtttgccgataacaaagcagctattgatgcagcggttacccgtatccgt
aatatcgttgctaaaccagaaattggtgaaatttaccaaggtaaagtaaaatcaattatg
ccattcggtgcatttgttgaggtaatgccaggtaaagatggtttattgcacatctctgaa
atttcatgggagcgtttagaaaccatggacggtgtattgaaagaaggtgataaaatcgaa
gttaagttgttagacatcgataaacaaggtaaaatgaaactttctcgtaaagttttatta
cctagaccagaaaaaccagctgcaccaaaagcttaa
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