Pedobacter riviphilus: H9N25_11530
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Entry
H9N25_11530 CDS
T08657
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
prk
Pedobacter riviphilus
Pathway
prk02020
Two-component system
prk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
prk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
H9N25_11530 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
H9N25_11530 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
prk03021
]
H9N25_11530 (rpoN)
Transcription machinery [BR:
prk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
H9N25_11530 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
DUF1216
HTH_12
MarR
DUF4158
LacI
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
QNR86959
UniProt:
A0ABX6TN05
LinkDB
All DBs
Position
2802489..2803961
Genome browser
AA seq
490 aa
AA seq
DB search
MLKQHLQQKLLQKLSPQQIQFIKLLQVPTVALDTRVKEELEENPALEDPSLMTQDEPKSE
YDDLNDRPEDYEQSSEDTSMDEFNVDDYLQDDSANDYSTNYNNGDDDEEKKETPIAIEST
FFESLQEQLDLIPLSDQDFIIGKQIIGSLDDDGYLRRPLGSMIDDLAFSQNVMVEEDDVL
EMLKLIQGFDPPGIGARDLKECLLIQLKRKDPNNPIIVKAMNVVENYLDEFTRKHYDKLE
KSLGLDSEELKEVVNEILRLNPKPGDANQVTTKQMQIIPDFHISNNDGVLILTLNSKNAP
ELKVSRSYQEMFEHYDKASSKDKKLKEAVQFVKQKLDSARWFIDAIKQRQQTLLKTMNAI
MHYQYEYFLTADERKMRPMILKDIADKIDMDISTVSRVANSKYVQTEFGTFLLKSFFSEA
IQTENGEEVSNKEVKKILEDCIGNEDKRKPLADEKLTEILKERGYNIARRTVAKYREQMN
IPVARLRKEL
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgctaaagcaacacttacaacaaaaattattacaaaagttatcaccacaacaaatacag
tttattaaactgttgcaggtgccaaccgttgctttagatacccgtgtaaaagaagagctc
gaagaaaaccctgctcttgaagatccaagtttaatgactcaggatgagccaaaaagcgaa
tatgatgatttaaatgacaggcctgaagattacgaacagtcatcagaagataccagcatg
gatgaatttaatgtagatgattatttacaggatgattctgccaatgattacagcaccaac
tacaataatggcgacgatgatgaggagaagaaagaaaccccaattgccattgaaagtact
ttttttgaaagcttgcaagagcaattagaccttattccgctgtccgatcaggattttatt
attggcaaacagattattggcagtttagatgatgatggttatttacgccgtccgttaggc
tccatgatcgatgatcttgctttttctcagaatgttatggtggaggaagatgatgtattg
gaaatgttaaaactgatccaaggcttcgatcctcctggtattggtgcaagagacctgaaa
gaatgtttgttgatccagttaaaaagaaaagacccaaacaacccgattatagttaaagca
atgaatgttgtagaaaactatttggatgagtttacacggaaacattacgataaattagaa
aaaagtttaggcttagatagtgaagaacttaaagaggtagtaaacgaaattttgcgttta
aaccccaaaccaggtgatgccaatcaggttacaaccaaacaaatgcagattattcctgat
ttccacatcagcaataatgatggcgtattgattttgacgttaaattcgaaaaatgccccc
gagctaaaggtaagcagatcttaccaggagatgttcgagcattacgataaagcatcatcc
aaagataaaaagctgaaagaggctgttcagtttgttaaacaaaaattagattctgccaga
tggtttatagatgcgattaaacaaagacaacaaactttgttaaaaaccatgaatgccatt
atgcattatcaatatgaatattttttaacggccgacgagcgcaaaatgcgtccgatgata
ttgaaagatattgctgataaaatcgacatggatatctcaaccgtatcgagggttgcgaac
tctaaatatgtacaaaccgaatttggcaccttcctgttaaaatctttcttctcagaagca
atacagaccgaaaacggtgaagaagtttcgaataaagaggtaaaaaaaatattggaagac
tgtatcggaaatgaagataaacgcaaacccttagcggatgaaaaattaaccgaaatttta
aaagaaagaggttataacattgccagaaggactgtcgcgaaatatcgcgagcaaatgaat
attccggtagcaaggctaagaaaagaactttag
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