Pedobacter riviphilus: H9N25_13725
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Entry
H9N25_13725 CDS
T08657
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
prk
Pedobacter riviphilus
Pathway
prk03030
DNA replication
prk03430
Mismatch repair
prk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
prk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H9N25_13725 (holA)
03430 Mismatch repair
H9N25_13725 (holA)
03440 Homologous recombination
H9N25_13725 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
prk03032
]
H9N25_13725 (holA)
03400 DNA repair and recombination proteins [BR:
prk03400
]
H9N25_13725 (holA)
Enzymes [BR:
prk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
H9N25_13725 (holA)
DNA replication proteins [BR:
prk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
H9N25_13725 (holA)
DNA repair and recombination proteins [BR:
prk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
H9N25_13725 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
Motif
Other DBs
NCBI-ProteinID:
QNR83035
LinkDB
All DBs
Position
complement(3371508..3372530)
Genome browser
AA seq
340 aa
AA seq
DB search
MTAAEIIKDIKARKFKPVYLLHGEESYYIDQVTDYIEDKLLNDAEKGFNQTVLYGKDTDM
ATVLGAAKRYPMMSDYQVVIVKEAQDLKWGKEDASSKEGEFVLNYFEKPLPSTILVLAFK
YANFDKRKKIYKAISKSGLIFQSDPVRDYKLVPWIEEFIKDKGYKIDQQASALMAEYLGT
DLSKIANEIEKLMLNVPKEVTINTDLVQKNIGISKEYNVFELQKALAIRDVLKCNKIINY
FASNPKANPTVMVLANLGGYFTKLLKYHYIPNKADAASALGVPPFFIKDYEVAARNYNTG
KVFQVIGLLREYDLKSKGLDSTGNVDDGELLKELVFKIVH
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgactgctgccgaaattattaaagatatcaaagcccgaaaattcaaacctgtgtatttg
ctgcacggcgaagaatcttactatatcgatcaagtaacagattatattgaagataaattg
ctgaatgatgccgaaaaaggcttcaaccagacagttttatatggcaaagataccgatatg
gcaacggttttgggtgctgcaaagcgatacccaatgatgtctgattaccaggtagtaatt
gttaaagaggcacaggatttaaagtggggcaaagaagatgcgagcagcaaagagggcgaa
tttgtgctcaattattttgaaaagcctttaccgagtaccatattggttttggcctttaag
tatgcgaacttcgataaacgaaaaaaaatctataaggccattagtaaaagtgggttgatt
tttcagtcagatcctgtccgcgattataaactggtaccctggatcgaggaatttattaaa
gataaaggttacaagatcgatcagcaggcatcggctttaatggccgaatatttaggaacc
gacctttctaaaattgccaatgagatcgaaaaattaatgctcaatgttccaaaagaagta
accattaataccgatctggttcagaaaaacataggcattagtaaagaatataacgttttc
gaattgcagaaggcactggccatccgcgatgtgctgaaatgcaataaaattatcaattac
ttcgccagcaaccctaaagccaatccaacagtaatggttttggccaatttaggtggttac
tttactaaacttctaaaataccattatatcccaaacaaggccgatgccgcatcagctttg
ggcgtgcctccattctttattaaagattatgaggtagcagcaagaaattacaacaccgga
aaagtttttcaggtgatcgggttactccgcgaatacgatttaaaaagcaaaggtttagat
agtaccggaaatgttgatgatggagaactcttaaaggaactcgttttcaaaattgtgcac
tag
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