Pedobacter riviphilus: H9N25_15165
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Entry
H9N25_15165 CDS
T08657
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
prk
Pedobacter riviphilus
Pathway
prk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
prk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9N25_15165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
prk03019
]
H9N25_15165
03009 Ribosome biogenesis [BR:
prk03009
]
H9N25_15165
Enzymes [BR:
prk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H9N25_15165
Messenger RNA biogenesis [BR:
prk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H9N25_15165
Ribosome biogenesis [BR:
prk03009
]
Prokaryotic type
rRNA helicases
H9N25_15165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
QNR83297
LinkDB
All DBs
Position
3717994..3719892
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AA seq
632 aa
AA seq
DB search
MTNPFQLLGISDDVVNAVKDLGFENPTPIQEQSIPVLLEGTNDFVGLAQTGTGKTAAFGL
PLLELIDFKVNKPQALILCPTRELCLQIANDLKNFSKNIANAHVVAVYGGANIMQQLREI
RQGIQIVVATPGRMLDIIGRKAIDFSNVKYVVLDEADEMLNMGFQDDINDILSTTPDDKK
TWLFSATMPAEVRRIAKNYMDNPVELTMGTKNTGNVNIEHEYYIVRARDKYAALKRIVDF
NPEIFAVVFCKTKLDTQDVAEHLIKDGYNADALHGDLSQQQRDKVMQRFRERNMQLLIAT
DVAARGIDVNNVTHVINYSLPDEIESYTHRSGRTGRAGKTGISICIINSKELGKIRQLER
IIGKQFTKAELPTGFDVCEKQLFSLVHKVHNVEVNNEQIDQYIPRIMDEFADLSKEDVIK
RFASLEFNRFLDYYSKAPDLNAAVGDDRGERGERGERRGRGSEGYTRLFINLGSVDEFTR
GDMLSFICNNGKIGGKSVGKIDLKGVFSFFEVEDAVADKVFEGFKSVEFNGRQVRIEKSG
DGGRGEGAGERRGGDRRGGGFGGERRGGGGGGYRGGDRRSGGGSGRREGGNSGGGFRDFS
GRSRDDKGGNTGGPRREGGNREGGSGERRKKW
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgacaaacccatttcaattattggggataagtgatgacgtcgttaatgccgtaaaggac
cttggatttgaaaatccaacgccgattcaggagcaaagtattcctgtactgttagaaggc
actaatgattttgttggtttggcccaaacaggaacaggaaaaacagccgcatttggtttg
ccgctgttagaactaatcgattttaaagttaacaaaccacaggcattgattttatgccct
acccgtgagttatgcttgcagatcgctaacgaccttaaaaacttttctaaaaacattgct
aatgcccacgttgttgccgtttacggtggcgcgaacattatgcaacaactacgcgaaata
cgccaaggcattcagatcgtagtggccacgcccggccgtatgttggatatcattggccgt
aaagccatcgatttttcaaacgttaaatatgttgtgcttgatgaagctgacgagatgttg
aacatgggtttccaggacgatatcaacgacattttatcaactactcctgatgacaaaaaa
acctggttattctcggctaccatgcctgcagaagttcgccgtatagctaaaaactatatg
gataaccctgttgaattaaccatgggcacaaaaaatacaggtaacgtaaacatcgaacac
gaatattacattgttcgtgcacgtgataaatatgctgccttaaaacgtattgtagatttt
aaccctgaaatttttgctgtagtattttgcaaaaccaaattggatacgcaagatgttgca
gagcatttaattaaagatggttacaatgctgatgctttacacggcgatttatcgcaacaa
caacgtgataaggtaatgcaacgtttccgtgagcgtaacatgcagttattaattgctact
gatgttgccgcacgtggtatcgatgtaaacaatgtaacacacgtaattaactactcttta
cctgacgaaattgaaagttatacccaccgttctggccgtaccggtcgtgctggtaaaact
ggtatctctatctgtatcatcaactctaaagaattaggtaaaatccgtcagctagagcgc
attattggtaaacaatttaccaaagctgagctaccaacaggatttgacgtttgtgaaaaa
caattattctctttggtacataaagtacacaatgtagaggttaataacgaacagatcgat
cagtacatccctcgtattatggatgaatttgctgatttaagcaaagaagacgtgattaaa
cgttttgcatctttagagtttaaccgtttcttggattactattctaaagcacctgactta
aatgctgcggtaggcgatgatcgtggtgaaagaggtgagcgtggcgaaagacgtggacgt
ggtagcgaaggttacacccgtttattcattaacttaggctctgtagatgaatttacccgt
ggcgatatgttatcatttatctgtaataacggtaaaattggtggcaaaagcgttggtaaa
attgatttaaaaggtgttttctctttctttgaagtagaagatgctgttgccgacaaagtt
tttgaaggctttaaatcagttgaatttaacggtcgccaggtacgcattgaaaaaagcgga
gacggtggtcgtggtgaaggtgctggagagagacgcggcggtgatagacgaggcggtggt
ttcggcggtgaacgcagaggcggcggtggcggtggctaccgtggtggcgacagaagatca
ggtggtggtagcggcagacgtgaaggcggaaacagcggtggcggtttcagagatttctct
gggcgtagccgtgatgacaaaggtggcaacaccggaggtccacgcagagaaggcggaaac
cgtgaaggtggcagtggcgaacgcagaaaaaaatggtaa
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