Cutibacterium modestum: BCB70_03710
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Entry
BCB70_03710 CDS
T04515
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
prl
Cutibacterium modestum
Pathway
prl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
prl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BCB70_03710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
prl03400
]
BCB70_03710
Enzymes [BR:
prl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BCB70_03710
DNA repair and recombination proteins [BR:
prl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BCB70_03710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
GEMI5_RBS
Glyco_tran_WecG
MFD_D3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOH45153
LinkDB
All DBs
Position
complement(787861..791445)
Genome browser
AA seq
1194 aa
AA seq
DB search
MVTFGGLTSLLSREPVLSHAVEDALTRRTPTLDLQVTASARPAVVAVLSRSLDGSRRLPV
LLVTSTFREAEESVATLETWLGGDAVCYYPSWETLPHERLSPRTDTVGRRMEVLRRLCGT
EGEVPQVVVAPVRSLLQPQVAGLGRIKPVHLAVGEEHDLTELATELINAAYSRVDMVERR
GEFAVRGGIVDVFPPVLEHPVRIDFFGDKIEEMTSFAVADQRSTDETHEELICAPCRELI
LTDNVRSRAKALLPDHPELADMLERIGDGQAVEGMEALMPALVDEMELLVDVLPEHAMIV
LSDPEMVRSRAADLVRTSEEFLGAGWAAAAGGGQAPIDLAASGYRSLTRVRSHCLERGMA
WWSMSSFTLDASATDVLGADEPATSAPQTVNPQLVAVEPWRGDVEAAVKDLTTRLDDGWT
VVLCAEGEGTAKRMTELLGEHHVAARQVEDAALDVTEPCVQVIRRHQRHGFAAESLKLLV
ASTGDLAESQDPAVTSERRMPRRRRNQIQPLELKSGDFVVHEQHGVGRYVEMVQRTVGGA
TREYLVIEYAPSKKGQPGDRLFVPVNSLDQVTRYVGGDAPSLDRMGGGDWRKRKARARKA
VREIAAELIKLYAARQATKGHAFGPDTAWQRELEDAFAYVETPDQLTTIADVKRDMEQVV
PMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFQTFTERYAGFPVKV
AALSRFQTDAEAREVLEGLKRGTVDVVVGTHRLLAKEVEFKDLGLVIVDEEQRFGVEHKE
ALKRMRVNVDVLAMSATPIPRTLEMAVTGIREMSTIATPPEERHPVLTFAGPYDEGQVVA
AIRRELAREGQVFYIHNRVQSIEKTAVKLRELVPEARIVTAHGQMNEKQLERIMVDFWER
RADVLVCTTIVESGIDIPTANTLLIDRADLMGLSQLHQLRGRVGRSRARGYAYFLYPADK
PLSQTAHDRLATMAAHTDLGAGMAIAMKDLEIRGAGNLLGGEQSGHIADVGFDLYIRLVG
DAVAEFRGDGTAADEPEMRIELPVDANLPVEYVETERLRLEMYKRLAEVRSDEEIDAIGA
ELVDRYGPMPEPVQALLGVARFRLLCRQAGIHEVVPAGRNIRFSPVDLPESRVMRLKRLY
PGSVVKHTAGLVLVPKPMTAKVGGQPLGGAELLDWASRAVTGVLGVKTLASTSN
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
ttggtgactttcggcggattgacctcccttctttcccgcgagccggtgctctcccacgct
gtggaagatgctcttacccggcgcacccccactcttgacctccaggtgaccgcgtcggct
cgcccggcggtggtggccgtactgagccggtctctcgatggttcccggcgccttccggtg
ttgctagtgacgagtacgtttcgggaggccgaggagtcggttgccaccctggagacctgg
cttggcggcgacgccgtctgttactacccgtcgtgggagaccctgcctcatgaacgtcta
agcccgcgtaccgataccgtcggccgacgcatggaggtactgcgtcggctgtgtggcacc
gagggtgaggtgccacaagtagtcgtcgccccagtgcgttccttgctacagccgcaagta
gctggcttgggacgcatcaagccggtgcaccttgccgtaggggaggaacacgacctcaca
gagctggcgaccgaactcatcaacgccgcctatagccgtgttgacatggtggaacgccgt
ggcgaattcgcagtacgtggcggcatcgtcgacgtctttccaccagtgttggaacacccg
gttcgtatcgatttctttggtgacaagattgaggaaatgacctccttcgcggtagccgac
cagcgatcgaccgatgagacccacgaagaacttatctgtgctccgtgtcgtgagctcatt
cttaccgacaacgtgcgttcccgagccaaggccttactgcccgatcatcccgagctggct
gacatgctggagcggattggtgacggtcaggctgttgagggaatggaggctctcatgccg
gccctggtcgacgagatggaattgctcgttgacgtcctgcctgagcatgccatgatcgtt
ctgtcggatccggaaatggtgcgctcccgggctgcggatctggttcgcacttctgaagag
ttccttggcgctggatgggcagctgccgccggtggtggacaagctcctatcgacctggcc
gcctcgggttatcgcagcttgacccgcgtaagatcgcattgcctggagcgtggcatggcc
tggtggtcaatgtcctctttcaccttggatgcttcggcaactgatgtcctcggcgccgac
gagcccgccaccagtgctccgcagaccgtcaatccccagttagtggccgttgagccgtgg
cgtggcgacgttgaggcagccgtcaaagatctgacgacccgccttgacgacggttggacg
gtcgttctgtgcgccgagggtgagggcacggcgaaacgcatgaccgagctgctgggcgag
catcacgtcgcagccaggcaggtcgaagatgccgccctggatgtcactgagccgtgcgtt
caggtcatccggcgtcatcagcgtcatggttttgctgccgaatccctcaagttactcgtt
gcctccactggtgaccttgcggaatctcaggatccggccgtcaccagcgagcggcgtatg
cctcggcgacgtcgcaatcagattcagcctctggagctcaagtcgggtgatttcgtcgtc
catgagcagcatggtgtgggacggtacgtggagatggtgcagcgcactgtcggcggtgcc
acccgtgaatacctcgttatcgagtacgcgccgtccaagaagggtcagcccggcgaccgc
cttttcgtgccggtgaactcgctggatcaggtgacccgctatgtcggtggagatgctccc
agcctcgaccgcatgggtgggggagactggcgcaagcgcaaggcacgtgcccgcaaggcg
gttcgtgagatcgccgctgagctcatcaagctctacgcggctcggcaggccaccaagggg
catgctttcggccctgatactgcatggcagcgggagttggaggacgccttcgcctacgtt
gagacccctgaccagctcaccaccatcgccgacgtcaagcgcgacatggaacaggttgtt
ccaatggatcggctggtctgtggcgatgtcggctatggcaagactgaaatcgcggtacgc
gctgcgttcaaggccgtgcaggatggcaagcaggtggcagtgctggtgcctaccacgctg
ctggtgcagcagcatttccagaccttcaccgagcgttacgcgggattccccgtcaaggtg
gcggccctatctcgcttccagactgacgctgaagctcgcgaggtcctcgaggggctcaaa
cgcggtaccgtcgacgtcgtcgtcggtacccatcgcctgttggccaaagaggttgagttc
aaggatcttggcttggtcatcgtcgatgaggagcagcgttttggcgtcgagcacaaggag
gcacttaagcgtatgagggtcaacgttgacgtgcttgctatgagcgccacgccgatcccg
cgcaccttggagatggcagtaacgggcatccgtgagatgagtacgatcgccactccgccg
gaggaacgtcacccggtgctcactttcgccggaccctatgacgaggggcaggtcgttgcg
gccattcggcgcgagcttgcccgtgaaggtcaggttttctacatccacaaccgggtgcag
tccatcgagaagacggctgtcaagttgcgcgagctcgtgccggaggcgcggatcgtcact
gcccacggccagatgaacgagaagcagcttgagcggatcatggtggacttctgggaacgt
cgcgctgacgtgttggtctgtacgacgatcgttgagtcgggtattgacattcccactgcc
aacaccctgctcatcgatcgtgctgacctcatgggtctgtcccagcttcaccaattgcgt
ggccgagtggggcggtctcgggcgcgcggctatgcctacttcctgtacccggcggataag
ccactctctcagacggctcacgaccgcctggcgacgatggccgcccacaccgacctgggt
gccggcatggctattgccatgaaggatctggagattcgcggcgccgggaacctgcttggt
ggtgagcaatccgggcacatcgccgacgttggctttgatctgtacatccgtctggtgggt
gacgccgtcgctgagtttcgtggggacggcaccgctgccgacgagccggagatgcgcatt
gagctgcccgttgacgccaaccttccggttgagtacgtcgaaaccgagcgcctacgcctg
gagatgtacaaacgactggctgaggtgcgcagtgacgaggagattgacgccattggagcc
gagttggtcgaccgctatggaccgatgcccgagcccgtccaggccctgcttggggtggcg
cgattccgcctgctgtgccggcaggctggaattcacgaggtcgttccagccggacgtaac
atccggttttcgccggtggacctgccggaatctcgggtgatgcgcctcaagaggttgtat
cccggatcggtggtcaaacacacagcgggtctggtgctggtgcctaaacccatgaccgca
aaggttggaggccagcccttgggaggtgccgagctgctcgactgggcatcgcgagctgtc
accggggttttgggcgttaagactctggcatcgacaagtaactga
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