Prevotella sp. oral taxon 299: HMPREF0669_00342
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Entry
HMPREF0669_00342 CDS
T02809
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pro
Prevotella sp. oral taxon 299
Pathway
pro03410
Base excision repair
pro03430
Mismatch repair
pro03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HMPREF0669_00342
03430 Mismatch repair
HMPREF0669_00342
03440 Homologous recombination
HMPREF0669_00342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pro03400
]
HMPREF0669_00342
DNA repair and recombination proteins [BR:
pro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HMPREF0669_00342
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HMPREF0669_00342
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HMPREF0669_00342
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Actin_micro
Motif
Other DBs
NCBI-ProteinID:
EFC71670
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All DBs
Position
unnamed:complement(592763..594502)
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AA seq
579 aa
AA seq
DB search
MHFKWKYLPPNQEEISEAKALGEKLNLSNILSLLLVRRGIKTESAAKRFFHPQLSELINP
FLLKDMDVAVDRLNDAMGRKERILVYGDYDVDGCTSVALVYKFLRQYYSNIEYYIPDRYE
EGYGVSQKGIDYAYKNDVKLIIILDCGIKAIEEITLAKSLGIDFIICDHHVPDEEMPPAV
AIINPKRPDDTYPFKHLCGCGVGFKLMQAFAKNNGISFSRLAPLLDFCAVSIAADLVPVE
GENRILAYHGLKQLNQNPSIGLKAIIDICGLEEKDVSMSDIIFKIGPRINASGRIDNGKQ
SVDLLVEKDYSKALQQAKHIDEYNEQRKDIDKQMTEEANQIVSRIENQKQQSSIVVYDEN
WKKGVVGIVASRLTEIYFRPTIVLTKDGNLATGSARSIMGVDVYAAIKHCRDLLLNFGGH
TYAAGLTLHWDDIPKFKQRFQEYIENHILPEQKEATLEIDAQIDFKDISKKFFHDLKRFA
PFGPSNPKPRFITKGVFDYGTSKVVGREQEHIKLELVDSKSSHVMNGIAFGQSKSARYIK
SKRGFDIAYTLEENTFKRNLVQLQIEDIRPIEDDSTEEQ
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgcattttaaatggaaatatcttcctccaaatcaagaagaaatatctgaagcaaaggca
ttaggtgagaaactcaatttaagcaatatactatctttattgcttgttcgtcgtggaata
aagaccgagtctgcggctaaaaggttttttcaccctcagctatcagaattgattaatcca
tttcttttaaaagatatggatgtggcagtcgaccgccttaacgatgccatgggacgcaaa
gaacgaattcttgtatatggagattatgatgtagatggttgcacttctgttgccttagta
tataaattccttcgccaatactattcaaatatagaatattacattcctgatcgctacgaa
gaaggctatggagtaagtcaaaaaggtattgactatgcttataaaaatgatgttaagctc
attataattcttgattgcggaattaaagcaatcgaagaaattacactagcaaaaagcctt
ggtatcgactttattatatgtgaccatcacgtacctgatgaggaaatgccaccagctgtg
gccattatcaaccccaaaagaccagatgacacctatccctttaaacatctttgtggctgt
ggtgtaggcttcaaactcatgcaagcctttgctaaaaataatggaatatcattctctcgt
ctagctcctctactcgatttctgtgctgttagcattgccgctgatctcgttcctgttgaa
ggtgagaacagaatacttgcttatcatggattaaaacaattaaaccaaaatcctagtatt
ggcttaaaagctattatagatatctgtggcttggaggaaaaagatgtgtcgatgagcgat
atcatctttaagattggtcctagaatcaatgcttctggacgcatagacaatggaaagcaa
agcgtagacttattggttgaaaaagactattctaaagcccttcaacaagcaaagcatatc
gatgagtataacgaacaacgcaaagatattgataaacagatgaccgaagaggcgaatcaa
attgtctctcgcattgaaaatcaaaagcaacaatcgtctattgttgtttatgatgaaaac
tggaagaaaggtgttgttggaattgttgcatcccgattaaccgaaatatacttccgtcct
accattgtattaactaaagacggaaaccttgcaacaggctctgcacgaagcattatgggt
gttgatgtgtatgctgcaataaaacattgcagagatttattacttaactttggtggacat
acctatgcagcaggattaactttgcactgggacgacattccaaagttcaagcaacgtttt
caagaatatattgaaaatcatattcttccagagcaaaaagaagcgacactagagattgat
gcacaaatcgactttaaagatatttcaaaaaaattcttccacgatttaaagcgttttgca
ccttttggtccatcgaatcccaaaccaagatttataacaaagggtgtgtttgattatgga
acaagtaaagttgtggggcgtgaacaagagcatataaaacttgaactggttgattcaaaa
tcaagccatgtgatgaatggtattgcatttggacaaagtaaatcagctcgatatatcaag
tctaaaagaggatttgacattgcttataccctagaagaaaatacctttaaacgcaatctc
gttcaactacaaattgaagacatacgcccaatagaagacgattcaacagaagaacagtag
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